- Probe CUST_16170_PI390587928
- Source Contig U35_41862
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_16170_PI390587928 | Hv_44K_v2 | CGCCCCGCGCTGGACCTGGGGGGCGAGATCATAGAATTCATGAATTTAGAGGCAGGCCTG | 211 | GeneList: skyblue3 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.125 | 1.001 | 1.187 | 0.983 | 0.546 | 0.652 |
Raw | 79.383 | 102.525 | 113.838 | 135.910 | 29.105 | 37.645 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK360899 | 1639 | 2e-24 | 255 - 314 | 100 | 60 / 60 | plus | None |
Harvest21 | ABC37121 | 271 | 3e-25 | 212 - 271 | 100 | 60 / 60 | plus | |
Harvest35 | U35_41862 | 271 | 3e-25 | 212 - 271 | 100 | 60 / 60 | plus |
Contig Sequence (271 bp)
>U35_41862 271 Hv_44K_v2 TGGGCGAGGGCCGCCCGCCGCGCCGTCTCCGGATCGCCGGCAAGCGCTCGAGGGATGCGG GAAATGCTCGATCCTCCGCCGCGCCGCGGCCCGGCCTTCAAGACGAAGCTGTGCGCGCTC TGGAGGCGCGGCTCCTGCCCCCGCGGCCCCTCCTGCGGCTTCGCGCACGGCGAAGGCGAG CTCCGCACGCCGCCTCCCTACTCCACCTTCCCGCCCCGCGCTGGACCTGGGGGGCGAGAT CATAGAATTCATGAATTTAGAGGCAGGCCTG
Homology of Contig U35_41862 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |