barSeed - Barley Seed Development Database

Probe CUST_16168_PI390587928

Source Contig U35_27570

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16168_PI390587928	Hv_44K_v2	CTCTCCTAGCTAATTGCCTAGCTACGGGTAGCTCAGTTAGAACTAGCTAGCCGGTGGTCA	118	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371500	1135	2e-24	120 - 179	100	60 / 60	plus	None
MLOC	MLOC_72872.1	390	2e-24	225 - 284	100	60 / 60	minus	None
MLOC	MLOC_72873.1	558	2e-24	374 - 433	100	60 / 60	minus	None
MLOC	MLOC_72873.2	555	2e-24	371 - 430	100	60 / 60	minus	None
JLOC1	JLOC1_48495.2	538	8e-25	109 - 168	100	60 / 60	plus
JLOC1	JLOC1_48495.1	540	8e-25	108 - 167	100	60 / 60	plus
Harvest21	ABC30742	502	3e-25	94 - 153	100	60 / 60	plus
Harvest35	U35_27570	527	3e-25	119 - 178	100	60 / 60	plus

Contig Sequence (527 bp)

>U35_27570 527 Hv_44K_v2
ATAGGTTACTGCTAGTAGGCCACGACCAACCGCTCCCGTCAGCTCAGCTCCATCATCTGA
TTGCCGCCGCCGCCGCCCATCCAGCTCAGACTGACCGCTTCGTCTCACTCTCTTCTTCCT
CTCCTAGCTAATTGCCTAGCTACGGGTAGCTCAGTTAGAACTAGCTAGCCGGTGGTCACC
ACGCGCGCCCGCGGCACGTTTTTTAAGCCGGCCGGGTCGGACACGGCATGCGCTGCTCCG
CCCGCACGGCAAACCATGGCTCCAGCTTCCGCATCGCTCCTTCCCGCCGCCGGCGCCAAG
CGCCCCTTCGCCGCCGACTCCGCCGTCGACGCTGCTGAAGAAGGGCAGCCCCTCGCGCAG
AGCGCGGTGACCAAGAAGCATGGCGAGAGCCAGCAGGAGAAGCTGGAGTGCCCGCGGTGC
AGCTCCAGCGACACCAAGTTCTGCTACTACAACAACTACAGCACGGCGCAGCCGCGCCAC
TACTGCCGCACCTGCCGCCGCTACTGGACGCACGGCGGCACCCTGCG

Homology of Contig U35_27570 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None