barSeed - Barley Seed Development Database

Probe CUST_16165_PI390587928

Source Contig U35_27572

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16165_PI390587928	Hv_44K_v2	TGAAGTTGGACAGATTTTGTAGAGAGCACAAAATCAAACGGAGGATTCTGGTCTAAAAAA	599	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.260	1.498	1.212	0.792	0.264	0.286
Raw	667.002	1237.956	867.486	879.511	105.503	124.281

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249496.1	1891	3e-21	1762 - 1815	100	54 / 54	plus	None
MLOC	MLOC_64274.1	1530	3e-21	1470 - 1523	100	54 / 54	plus	None
JLOC1	JLOC1_42190.1	1681	2e-21	1480 - 1533	100	54 / 54	plus
Harvest35	U35_27572	670	3e-25	600 - 659	100	60 / 60	plus

Contig Sequence (670 bp)

>U35_27572 670 Hv_44K_v2
AGTGACAAGCCCAACCCCAAACAAGGAATAGGCATGCTGTCGTGGAGCAGCGACGGCCAT
TATTTCTTCACTCGGAACGACAACATGCCTACTGTTCTTTGGATATGGGACATCTGCCGC
CTCGAGCTCGCAGCCGTTCTTGTGCAGAAAGACCCCATCCGTGCTGCTGCCTGGGACCCT
ACGTGCCCACGCCTCGTCTTGTGCACGGAGAGCCCGCACCTGTACATGTGGACGCCATCC
GGCGCTTGCTGCGTCAACATTCCCTTGCCGAACTTCCGGATAGTCGACCTGAAATGGAAC
TCAGCGGGAAGCTGCCTCCTCCTCAAGGACCGCGATTCGTTCTGCTGTGCCGCGATTGTG
TCCGCTCTGCCCGAGGAAGAACCCGACGATCAAACCGACGAGACCTCCGAAGACGAATGA
CCTCCCGTGTCTTGCTTGCTGTCAGTTTGAATTGTAGCCATTATCAATGGAAATTATTAC
GTTGTAACATAGCAGATTAGCAGTAGATCGATTTGGGTGCGGCGACTGTTCTGATCTGGA
AGGGTGAGGAACACGGAAGAATGTTGTTTCTTCTGTTATACAACTGCTGTTGGGTTCCTT
GAAGTTGGACAGATTTTGTAGAGAGCACAAAATCAAACGGAGGATTCTGGTCTAAAAAAA
AAAAAAAAAA

Homology of Contig U35_27572 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g41370.1	471	5e-81	protein\|WD repeat-containing protein 8, putative, expressed
Brachypodium v1_2	Bradi3g33520.1	471	2e-84
Arabidopsis v10	AT5G07590.1	458	4e-59	Transducin/WD40 repeat-like superfamily protein \| chr5:2401712-2403731 REVERSE LENGTH=458