- Probe CUST_16160_PI390587928
- Source Contig U35_27575
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16160_PI390587928 | Hv_44K_v2 | GTGTATCTATGAATAAAATGGATGGAATAACCAAAGCGATGGTTTTGAGCGTGCAAAAAA | 182 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.540 | 0.457 | 0.461 | 2.410 | 7.269 | 18.212 |
| Raw | 3.314 | 3.951 | 4.412 | 43.904 | 49.930 | 144.158 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC36793 | 254 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC36772 | 254 | 6e-22 | 12 - 72 | 97 | 59 / 61 | minus | ABC36772 |
| Harvest35 | U35_27575 | 253 | 3e-25 | 183 - 242 | 100 | 60 / 60 | plus |
Contig Sequence (253 bp)
>U35_27575 253 Hv_44K_v2 GTCCAACCAACCAGCTTGCGGCCGGGCAAATGGGGGAGTGGAGCCAGTAATGGTTCGCTG CCCACTCACATACCCATCCAGGATGAGCCGGCCATGAACTGATGAATTAAGCCCCCTACC TGTACTTGTACCACCAGTAGTATCCTATTCATATGCATCATGTGCGAGCATAGGGTACGT GTGTGTATCTATGAATAAAATGGATGGAATAACCAAAGCGATGGTTTTGAGCGTGCAAAA AAAAAAAAAAAAA
Homology of Contig U35_27575 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |