barSeed - Barley Seed Development Database

Probe CUST_16159_PI390587928

Source Contig U35_41869

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16159_PI390587928	Hv_44K_v2	GAAAGATTATAGTGATCATATGGCCCTTGTCCGAGCTTATGAAGGATGGAAGGATGCTGA	403	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.414	1.161	1.538	1.096	0.634	0.563
Raw	33.485	38.726	50.315	52.876	11.905	11.126

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21037.4	1017	2e-24	440 - 499	100	60 / 60	plus	None
MLOC	MLOC_21037.1	1267	2e-24	729 - 788	100	60 / 60	plus	None
MLOC	MLOC_21037.3	1228	2e-24	628 - 687	100	60 / 60	plus	None
MLOC	MLOC_21037.2	1478	2e-24	653 - 712	100	60 / 60	plus	None
JLOC1	JLOC1_14592.1	1380	8e-25	583 - 642	100	60 / 60	plus
Harvest21	ABC37136	499	3e-25	404 - 463	100	60 / 60	plus
Harvest35	U35_41869	499	3e-25	404 - 463	100	60 / 60	plus

Contig Sequence (499 bp)

>U35_41869 499 Hv_44K_v2
GCAGATGTGTATATGATGCATTTGCAGAATACCAGCTTCCAGAGCTTCTTAGAACTCCTT
TGAATTCTCTGTGTTTGCAGATAAAAAGTTTGCAGGTTGGCAGCATTGGGGAGTTTCTAT
CAGCTGCTTTGCAGCCTCCAGAACCACGAGCCGTCCAAAATGCAGTGGAATTCCTGAAGT
TGATCGGATCATTAGATGAGAATGAGAACCTTACTGATCTAGGAAGATACCTCTCCATGC
TTCCAGTTGATCCAAAGTTGGGAAAGATGCTTATAATGGGTGCAGTTTTCCGTTGCATTG
ACCCTATACTTACTGTGGTTGCTGGATTGAGTGCCCGGGATCCTTTCCTGTTACCACAGG
ACAAGAAAGATTTGGCAGGAACTGCAAAATCAAGATTCTCAGCGAAAGATTATAGTGATC
ATATGGCCCTTGTCCGAGCTTATGAAGGATGGAAGGATGCTGAGAGGGAAGGATCTGGTT
ATGAGTACTGCTGGAGGAA

Homology of Contig U35_41869 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53760.1	1151	7e-103	protein\|ATP-dependent RNA helicase DHX36, putative, expressed
Brachypodium v1_2	Bradi1g08607.1	1151	5e-106
Arabidopsis v10	AT5G04895.1	1161	1e-90	DEA(D/H)-box RNA helicase family protein \| chr5:1428796-1434516 FORWARD LENGTH=1161