barSeed - Barley Seed Development Database

Probe CUST_16147_PI390587928

Source Contig U35_41872

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16147_PI390587928	Hv_44K_v2	TTTGCTCACCAATCAATACACCCCCGAAGATCTTGGCAAGATGCTCAGGGACCTCCGGCC	365	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.221	1.002	1.489	1.246	0.389	0.313
Raw	206.636	259.443	348.142	459.899	50.449	44.009

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373882	1791	2e-24	721 - 780	100	60 / 60	plus	None
MLOC	MLOC_73094.1	1599	2e-24	522 - 581	100	60 / 60	plus	None
JLOC1	JLOC1_48643.1	1659	8e-25	501 - 560	100	60 / 60	plus
Harvest21	ABC37141	495	3e-25	366 - 425	100	60 / 60	plus
Harvest35	U35_41872	495	3e-25	366 - 425	100	60 / 60	plus

Contig Sequence (495 bp)

>U35_41872 495 Hv_44K_v2
GGCCTCGACGACATCAAGCGCACCCTCGAGTCCTATCGCGCCGTCTCCCCCCGCTTATCC
GGCCCCGGCGTGGGCGGCAGAGGCGCCAACCCGTCGTTCCAGGATTTGCTCAAGAGCAGC
GGCGCCAACCAGGCGGGTCGCCCCCAGGGAGGAGCCCCCAACGCCGGCGACGGCAAACCG
TTCAGCCTCAGCTTCGCCAACATCCGCGAGAGCATCCGCAAGCTCGACCCGCAGCATGAC
AGGCAGCGCCAGCCGCCTTTGCGGTTCCTCAACAACACGCCGGAGAACATCTTCGGGAAG
GAGTTGCGCCAGAGGGCCGGGAAGCCGCATCCCGGGGAGGCGAAGGATGACGAGGACGAC
GGCGTTTTGCTCACCAATCAATACACCCCCGAAGATCTTGGCAAGATGCTCAGGGACCTC
CGGCCGGCTGACGCAGGGAAGGACGGGAAGGAGTGGTTCTCTCTCGAGGAGCTGCAGGGT
CGGATCGCCAAGATC

Homology of Contig U35_41872 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g54420.1	461	7e-53
Arabidopsis v10	None