barSeed - Barley Seed Development Database

Probe CUST_16126_PI390587928

Source Contig U35_39569

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16126_PI390587928	Hv_44K_v2	GGCTACGATCCTTTTGGTCTGGGCAAGAAGCCAGAGGACTTCGCCAAGTACCAGGCCTTT	160	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57061.2	1211	2e-24	381 - 440	100	60 / 60	plus	ABC00168 ABC00820 ABC50309
MLOC	MLOC_57061.1	1278	2e-24	597 - 656	100	60 / 60	plus	ABC00168 ABC00820 ABC50309
JLOC1	JLOC1_36933.1	1639	8e-25	552 - 611	100	60 / 60	plus
Harvest21	ABC46369	395	3e-25	282 - 341	100	60 / 60	plus
Harvest21	ABC46180	357	3e-25	268 - 327	100	60 / 60	plus
Harvest21	ABC45387	548	3e-25	340 - 399	100	60 / 60	plus
Harvest21	ABC35743	544	3e-25	309 - 368	100	60 / 60	plus
Harvest21	ABC00820	1437	3e-25	431 - 490	100	60 / 60	plus	ABC00820
Harvest35	U35_39569	544	3e-25	309 - 368	100	60 / 60	plus
Harvest35	U35_341	1437	3e-25	431 - 490	100	60 / 60	plus

Contig Sequence (544 bp)

>U35_39569 544 Hv_44K_v2
GCCGAAGCCGAAGCCCGCGCCCGTGGCCACCTCGAGCGCCGGCATCGACGACGAACTCGC
CAAGTGGTACGGCCCTGACAGGAGGATCTACTTGCCCAACGGCCTCCTTGACCGGTCGGA
GGTGCCGGAGTACCTCAACGGCGAGGTTCCCGGAGACTACGGCTACGATCCTTTTGGTCT
GGGCAAGAAGCCAGAGGACTTCGCCAAGTACCAGGCCTTTGAGCTCATCCATGCCAGGTG
TGCCCAACGGCCTCCTTGACCGGTCGGAGGTGCCGGAGTACCTCAACGGCGAGGTTCCCG
GAGACTACGGCTACGATCCTTTTGGTCTGGGCAAGAAGCCAGAGGACTTCGCCAAGTACC
AGGCCTTTGAGCTCATCCATGCCAGGTGGGCCATGCTCGGCGCCGCCGGATTCATCATCC
CCGAGGCGCTCAACAAGTTTGGCGCGAACTGCGGCCCCGAGGCCGTTTGGTTCAAGACCG
GCGCCCTGCTCCTTGACGGCAACACCCTCAACTACTTCGGCAACAGCATCCCTATCAACC
TGAT

Homology of Contig U35_39569 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g13890.5	187	4e-66	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi4g21170.1	287	3e-65
Arabidopsis v10	AT4G10340.1	280	1e-64	\| Symbols: LHCB5 \| light harvesting complex of photosystem II 5 \| chr4:6408200-6409496 FORWARD LENGTH=280