barSeed - Barley Seed Development Database

Probe CUST_16125_PI390587928

Source Contig U35_41880

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16125_PI390587928	Hv_44K_v2	TCATTCCCCTCAAAGACGAAGAGCAGCTGACGAACGGGTTCATGGACATGGCGGAGGACT	271	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358124	1754	7e-23	592 - 651	98	59 / 60	plus	ABC37155
MLOC	MLOC_74220.1	1722	7e-23	687 - 746	98	59 / 60	plus	ABC37155
JLOC1	JLOC1_49455.1	2080	4e-23	731 - 790	98	59 / 60	plus
Harvest21	ABC37154	369	3e-25	272 - 331	100	60 / 60	plus
Harvest35	U35_41880	369	3e-25	272 - 331	100	60 / 60	plus

Contig Sequence (369 bp)

>U35_41880 369 Hv_44K_v2
GCCTCGTCGGACGCCGACGCCACGCAGGACCCGGCGTCGCTCTCCTACTCCACCATGACC
ACCTGCCTCCCCCACTTCAAGAACCTGCTCGCTGGCCTCAACGGCGGCACGCCCGGGGCG
CCGCCGGTCACGTGCGTCGTGGCGGACGGCCTCATGAGCTTCGCCGTCGACGCCGCGAGG
GAGCTGGGCCGGCCGTGCGCGCTGTTCTGGACGGCCAGCGCCTGCGGCTACATGGGCTAC
CGCAACTTCCGCCCTCTCATCGACCGGGGCATCATTCCCCTCAAAGACGAAGAGCAGCTG
ACGAACGGGTTCATGGACATGGCGGAGGACTGGGCGCCGGGGATGAGCAAGCACATGCGG
CTGAAGGAC

Homology of Contig U35_41880 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g36840.1	494	1e-63	protein\|cytokinin-O-glucosyltransferase 2, putative, expressed
Brachypodium v1_2	Bradi3g46855.1	487	4e-56
Arabidopsis v10	None