- Probe CUST_16124_PI390587928
- Source Contig U35_41881
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16124_PI390587928 | Hv_44K_v2 | AATTCGCATCGGGTACATCTATGCTATAATATGTGAAGCAGCTGTACTTGTTTCAAAAAA | 11 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.175 | 1.577 | 1.364 | 0.799 | 0.298 | 0.369 |
| Raw | 3455.207 | 7147.573 | 5384.487 | 4976.823 | 651.686 | 891.403 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC37158 | 152 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC37158 |
| Harvest35 | U35_41881 | 152 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (152 bp)
>U35_41881 152 Hv_44K_v2 TTTTTTTTTTTTTTTTTGAAACAAGTACAGCTGCTTCACATATTATAGCATAGATGTACC CGATGCGAATTCTACAGGTTACAANCGAGCCAGTGCCATATACTCTCGACATTGTAGTGG ATANNAATCATTGTACACGCAAAACCGAAGGC
Homology of Contig U35_41881 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |