barSeed - Barley Seed Development Database

Probe CUST_16117_PI390587928

Source Contig U35_27593

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16117_PI390587928	Hv_44K_v2	GCAGCCATAAATCTGTTCACCATTACTCAAATTTTATGAAATGATCACCAATACTAGCAG	725	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.820	6.609	1.746	0.225	0.028	0.029
Raw	4476.563	3901.750	890.640	178.559	7.533	8.942

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64828.1	1615	2e-23	1509 - 1566	100	58 / 58	plus	ABC07684 ABC21477
JLOC1	JLOC1_42607.1	1575	1e-23	1518 - 1575	100	58 / 58	plus
Harvest21	ABC21477	813	3e-25	726 - 785	100	60 / 60	plus	ABC21477
Harvest35	U35_27593	813	3e-25	726 - 785	100	60 / 60	plus

Contig Sequence (813 bp)

>U35_27593 813 Hv_44K_v2
AGGGCTCGGCCCGCACGCCTCGGTCGGCCGGAGGTTCTCCTACTGCCTCGTGCCCTACTC
CATCAACGCCTCCTCCGCGCTCAACTTCGGCGCCCGCGCCGCCGTGACGGAGCCGGGAGC
GGCCACGACACCGCTGGTCCCGTCCAGGGTGAAGACCTACTACACCATCGACCTCGTGTC
CGTCAAGGTCGGCCACGCGACCTACAAGGCGCCGCACCGGTCGTCCCCCGCCATCGTCGA
CTCTGGCACAACGCTGACGTTCCTCGACAAGGCGCTGCTAGACCCACTGGTGAAGGAGCT
GGCCGGGCGGATCAAGCTCCCGAAGGCCCCGCCGCGGGCGGACCTCCGTCTGCCGCTGTG
CTACAACGTGAGCGGGCTACGGGAGGGGCAGATCGCGGCGAAGATCCCTGACGTGAAGCT
GGGGCTGGGCGGCGGCGCGGCGGTGACGCTCAAGGCGCTGAACACGTTCGTGGTGGTGCA
GGAGGGGACCCTGTGCTTGGCGATTGCGCCGGCGCCGGAGCGCTTGCGGACGTCCATCAT
CGGGAACATCGCGCAGCAGAACATGCACGTCGGTTACGACCTCGACAAGCGCACCGTCAC
CTTCGCCGCGGCCGACTGCGCGAGGTCCTACCCCGCCAACGCACCGGCCCACGCACCGGC
CCACGCCCACGCCCACGCACCCGTNCCCGCCCCGGCACCAGCCCCCTCCGGCTCCGTGTA
GGCGTGCAGCCATAAATCTGTTCACCATTACTCAAATTTTATGAAATGATCACCAATACT
AGCAGNTCGTATTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_27593 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g08330.1	455	1e-73	protein\|aspartic proteinase nepenthesin-1 precursor, putative, expressed
Brachypodium v1_2	Bradi2g04920.1	539	2e-72
Arabidopsis v10	None