barSeed - Barley Seed Development Database

Probe CUST_16113_PI390587928

Source Contig U35_27595

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16113_PI390587928	Hv_44K_v2	GGACGAGCGGCTGGAGTATAATAATAGATACTTGGACATTATTATCTTGTTCATCATGTA	434	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.059	2.216	0.791	0.605	0.963	0.858
Raw	29.726	26.374	7.202	7.576	3.434	3.216

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249432.1	2035	2e-24	1849 - 1908	100	60 / 60	plus	None
MLOC	MLOC_19816.2	1009	2e-24	159 - 218	100	60 / 60	minus	None
MLOC	MLOC_19816.1	1008	2e-24	163 - 222	100	60 / 60	minus	None
JLOC1	JLOC1_13732.1	1017	8e-25	774 - 833	100	60 / 60	plus
Harvest21	ABC21879	541	3e-25	435 - 494	100	60 / 60	plus
Harvest35	U35_27595	543	3e-25	435 - 494	100	60 / 60	plus

Contig Sequence (543 bp)

>U35_27595 543 Hv_44K_v2
GCAGCAATCCTAAGGTCACCTTCAACTACTTCAACCATCCACAGGATCTGAGACGATGTG
TTTACGGGATCAAGACCATAGAGAGAATAGTTAGTACAAACACTTTCTCAAACTTTACTC
CCAAAGATGGTGGATATTCAATGGAAAAACTGCTCAACATGAGTGTAGCAGCTAACATAA
ACCTGATACCGAAGCACACAAATGACAGCACATCCTTGGAGCAGTTTTGCAGGGATACAG
TGGTCACCATCTGGCATTACCATGGTGGGTGCCATGTAGGCAAGGTGGTTGACCAACAGT
ACAAAGTTATTGGCGCCTCAGGCCTCCGGGTAATTGACGGATCAACCCTATCCAGGTCGC
CAGGAACAAACCCACAAGCCACAGTCATGATGATGGGCAGATACATGGGAGTAAAGATCT
TAAGGGAAAGGTTAGGACGAGCGGCTGGAGTATAATAATAGATACTTGGACATTATTATC
TTGTTCATCATGTAAGAATGTGACTTAGGAGAGAAGTAAATAGTAATTTTTGAAGAGATT
CAA

Homology of Contig U35_27595 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g31030.1	585	2e-87	protein\|HOTHEAD precursor, putative, expressed
Brachypodium v1_2	Bradi3g35310.2	584	4e-91
Arabidopsis v10	AT1G72970.1	594	5e-61	\| Symbols: HTH, EDA17 \| Glucose-methanol-choline (GMC) oxidoreductase family protein \| chr1:27452872-27455706 FORWARD LENGTH=594