barSeed - Barley Seed Development Database

Probe CUST_16106_PI390587928

Source Contig U35_21178

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16106_PI390587928	Hv_44K_v2	TTGTTGCGTCGTCGAGGTCGGCACGTAGGCTAGCCGGAAGAAGAGGCCGGACATGACGAT	54	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4531.4	1416	2e-24	1245 - 1304	100	60 / 60	minus	ABC20407
MLOC	MLOC_4531.1	1419	2e-24	1252 - 1311	100	60 / 60	minus	ABC20407
MLOC	MLOC_4531.3	1385	2e-24	1218 - 1277	100	60 / 60	minus	ABC20407
MLOC	MLOC_4531.2	1422	2e-24	1255 - 1314	100	60 / 60	minus	ABC20407
JLOC1	JLOC1_2834.2	1788	8e-25	102 - 161	100	60 / 60	plus
JLOC1	JLOC1_2834.1	1784	8e-25	101 - 160	100	60 / 60	plus
Harvest21	ABC22307	581	3e-25	26 - 85	100	60 / 60	plus
Harvest35	U35_21178	612	3e-25	55 - 114	100	60 / 60	plus

Contig Sequence (612 bp)

>U35_21178 612 Hv_44K_v2
TCGAGCACTGTTGGCCTTGGACCCCGTCGTGCATCGCCATTCAGCTCCATCCTCTTGTTG
CGTCGTCGAGGTCGGCACGTAGGCTAGCCGGAAGAAGAGGCCGGACATGACGATGCTGGG
GCAGCCTCAGCAGGTGCAGCCGGCGGCGGCCTTCGGGGACACCACGCTGACCAAGGTGTT
CGTGGGCGGGCTGGCGTGGGAGACGCACAAGGACACCCTCCGCGAGCACTTCGAGCGCTT
CGGCGACATCCTCGAGGCCGTCATCATCTCCGACAAGCTCACCGGCCGCTCCAAGGGCTA
CGGCTTTGTGACGTTCAAGGAGGCGGATGCGGCCAAGAAGGCGTGCGAGGACGGCACGCC
GGTCATCAACGGCCGCCGCGCCAACTGCAACCTCGCGTCCCTCGGCGCCAAGCCGCGGCC
CCAGCCGCCGCACCTCCTCCGCCCCTCGCCGCCGACCACACCGGCGCCGCACCACATGCC
CGCTCTTCCGTCCCCGCACCACCAGCCCGCGCCAGCAGCCATCGCGGTGGGGTCCAGGGG
CGTGTCGCCGGTGCCGTGGTACTACCACCCTTCCACGACGCCGCCGCCGCCGCCGCAAGC
CGCGCACTACGG

Homology of Contig U35_21178 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17760.1	311	4e-62	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None