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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_16105_PI390587928Hv_44K_v2TGTTCTTACTATTTGCGATGATTGGAACTTGGGAAGTTCATGTCTCTGCCTGCTAAAAAA750GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 6.0159.3082.3380.3320.0980.078
Raw 881.6472158.127444.285101.7909.8829.363



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_54945.311229e-22139 - 19310055 / 55minus ABC25923
MLOCMLOC_54945.243669e-221067 - 112110055 / 55minus ABC25923
MLOCMLOC_54945.141239e-22824 - 87810055 / 55minus ABC25923
MLOCMLOC_54945.49529e-22131 - 18510055 / 55minus ABC25923
JLOC1JLOC1_35401.120505e-22930 - 98410055 / 55plus
JLOC1JLOC1_35399.119135e-22821 - 87510055 / 55minus
Harvest21ABC259235783e-25508 - 56710060 / 60plusABC25923
Harvest35U35_211798213e-25751 - 81010060 / 60plus



Contig Sequence (821 bp)

>U35_21179 821 Hv_44K_v2
GACTGCCACCGGCCAGCTGCACCACGCTCCCCTTCCCTTCCCCAGCTAGCCGCCGCTGGC
TCCACTTCACAGACAGCATCGCCACCTTCATTTGTTTCCCCCCAGCTTCCTTCGCGTCAC
CGCTCCCTGGCTAGGTAGGTGAAAGCGCTCCGGTTGGTAGCTAGCGACATGGCCGGGGGA
AGAGGTGGTGCAAGTCATGCCGCCGTCGTCGTCTCCGCCGCGGCGCTCGCCGTCGCGTGC
TGCTGCATGGGCGTCGCCGGCGCGGCCACCTACTACGTCGGCGACGGCGGCGGCTGGTCC
CTGAGCAGCGCCAGCTGGCCCAACGGGAAGCAGTTCCGCGCCGGCGACGTCCTCGTGTTC
AGGTACAGCCCCTGGATCCACAACGTGGTGGCGGTGGGCGAGGACGGGTACGCCCGGTGC
GCCACGCCGGCGGGGGCGAGGACCTACGAGTCCGGCAACGACGCCGTCCGGCTCGCCAGG
GGCGACAACCGCTTCATGTGCACCCGCTTCTACCACTGCAACCTCGGGATGAAGATGGTC
GTCAACGCCGCCTGACCGCCGGCCTGCCACGGCACTGCCATCTTCAAGCTCAAGAAAAGT
TAGGCTCTCCTCTGTTGCATTTGGATCTGGTTGCCGTGAGGGTTGTGGTTTGCGGTTCTA
GCTGGTAGAAGTGGGTGATCGTGAGACTTTGTGTGATTCTCTGACGACCATCTGCGTGTG
CCGTGTTGACTCTGACGGAATGTGAGCGTTTGTTCTTACTATTTGCGATGATTGGAACTT
GGGAAGTTCATGTCTCTGCCTGCTAAAAAAAAAAAAAAAAA



Homology of Contig U35_21179 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None