barSeed - Barley Seed Development Database

Probe CUST_16096_PI390587928

Source Contig U35_45134

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16096_PI390587928	Hv_44K_v2	ACCTGGCTAACACCGACGGCCGGAGGAAGCTGGTCATCGCCAAGATCCTCCACACCATCT	174	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59994.2	922	2e-24	391 - 450	100	60 / 60	minus	ABC01356
MLOC	MLOC_59994.1	1744	2e-24	1230 - 1289	100	60 / 60	minus	ABC01350 ABC01351 ABC01353 ABC01356
JLOC1	JLOC1_39089.1	1849	8e-25	482 - 541	100	60 / 60	plus
Harvest21	ABC43601	338	3e-25	175 - 234	100	60 / 60	plus
Harvest21	ABC01356	538	3e-25	414 - 473	100	60 / 60	minus	ABC01356
Harvest21	ABC01355	525	3e-25	232 - 291	100	60 / 60	plus
Harvest21	ABC01354	2157	3e-25	875 - 934	100	60 / 60	plus
Harvest35	U35_45134	338	3e-25	175 - 234	100	60 / 60	plus
Harvest35	U35_14371	538	3e-25	66 - 125	100	60 / 60	plus
Harvest35	U35_14370	527	3e-25	232 - 291	100	60 / 60	plus
Harvest35	U35_14369	2158	3e-25	875 - 934	100	60 / 60	plus

Contig Sequence (338 bp)

>U35_45134 338 Hv_44K_v2
CCATCATGGAGGTGAACCCGCGCGCGTTCGTCGTGCCGGGATTCACGGACGCGGACGGCG
TCGGCTACGTCGCTCAAGGCGAGGGGGTGCTGACGGTGATCGAGAACGGCGAGAAGCGGT
CCTACACCGTCAAGGAAGGCGATGTCATCGTGGCGCCGGCGGGGTCGATCATGCACCTGG
CTAACACCGACGGCCGGAGGAAGCTGGTCATCGCCAAGATCCTCCACACCATCTCCGTGC
CCGGCAAGTTCCGCGCACAGGATCAGGACGAGGGCTTCGTCGCCGGACCCGAGCAGCAGA
GCCGAGAGCAGGAGCAGGAGCAGGAGCGGCACCGCCGC

Homology of Contig U35_45134 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None