barSeed - Barley Seed Development Database

Probe CUST_16095_PI390587928

Source Contig U35_45135

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16095_PI390587928	Hv_44K_v2	GGTGCTAGTACCACCGACGAATAATAAGTTGTTGCATATCTTATCTACTACGTAAATTAA	412	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.045	0.285	0.613	1.587	1.545	2.597
Raw	16.075	165.410	334.453	1361.453	449.917	832.700

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7938.1	1095	2e-24	879 - 938	100	60 / 60	plus	ABC03233 ABC03234
JLOC1	JLOC1_5254.1	1049	8e-25	839 - 898	100	60 / 60	plus
Harvest21	ABC43602	523	3e-25	413 - 472	100	60 / 60	plus
Harvest21	ABC03233	819	5e-23	661 - 716	100	56 / 56	plus	ABC03233
Harvest35	U35_45135	523	3e-25	413 - 472	100	60 / 60	plus
Harvest35	U35_1179	819	5e-23	661 - 716	100	56 / 56	plus

Contig Sequence (523 bp)

>U35_45135 523 Hv_44K_v2
GGTTATCGCATTTCTCAGGTAAGGCTCAGGTTTCGGAGTAGCGAAGCTTTTAAAGTGTGC
ATCTGGCTACCGGCATGGCTGGAGAGCAAGCGTTCCACCGGGGAGGCGTGTACGGAGGCG
GCAGCGCCGTCGGGCCGGACTACATGCGGGCCATCCGCGGCGACGACGACTACTACGGCG
GTGCTGGCGTGGATGTACAAGTACCTGTCGCACGGGTCGCCCTCGCCGATGGGGGCTGAC
ACGGTGGACCACGCGGGCGCGAAGCTGGACTCCAAGGCGCACGACGTGAAGAACTGGGCG
CAGCATCGCCTCGACCAGGCCCGAGCTCCGTAGGCATGTTTTGGTCATTTGCCCTCCTAT
GTGGTTACCAGTGTGGATCCACGCCTCTCTATGTACGGACGTGCCTGCGGGCGGTGCTAG
TACCACCGACGAATAATAAGTTGTTGCATATCTTATCTACTACGTAAATTAAAAATAAAA
ATGGAAAACGCCTGTACTACTTGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_45135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None