barSeed - Barley Seed Development Database

Probe CUST_16093_PI390587928

Source Contig U35_45137

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16093_PI390587928	Hv_44K_v2	CTATAGTATGTATGTAATTTGTAAATGGAGCAGATCAGGAATGCTTGCTCCTGTTTCAAG	433	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.193	0.357	0.965	1.331	1.094	1.308
Raw	7.161	21.811	52.786	109.509	32.115	43.607

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45347.1	872	2e-23	681 - 738	100	58 / 58	plus	None
JLOC1	JLOC1_29441.1	842	1e-23	645 - 702	100	58 / 58	plus
Harvest21	ABC43604	493	3e-25	434 - 493	100	60 / 60	plus
Harvest35	U35_45137	493	3e-25	434 - 493	100	60 / 60	plus

Contig Sequence (493 bp)

>U35_45137 493 Hv_44K_v2
ACGCGAAGGTGGACAAGGTGGATGCCGAAGAGGCGCGGCACTGGAAGGCGCAGTTCCTGA
TCCACAAGGCGCTCGAGACGGGACCGACTAGGCGGCCGCAGCCGGCGGCGGCATTTGCGA
GGGTTGGCGGCTGCAGGGTCGTCAGGTCAGTGAGGATCGGCATCCGGCTCAAGAGGCTCA
GGATCGCCGTCCGGAGCTTCAGGCTGCGCGTCTGCCGGAGCGTCCTCAAGCACCTCAAGA
ATCTCAGGAGGCTCGGATCTCCTCGTTCTTGATCCCCTCGATCTCTTCCATCTGAAAGAG
TTTTTTATGTGCCAGGGAAACTAAGCTGCCTTCTATTTCATTCGCAATACCTAACAACAA
CAACTTCTGCCCTTGATTTGCCCAGAATATTTGGGCGCGCGCGCGTGTGTGTGGATCGAT
GCATAGTATAGGACTATAGTATGTATGTAATTTGTAAATGGAGCAGATCAGGAATGCTTG
CTCCTGTTTCAAG

Homology of Contig U35_45137 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None