barSeed - Barley Seed Development Database

Probe CUST_1608_PI390587928

Source Contig U35_19891

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1608_PI390587928	Hv_44K_v2	ACCTGTACAGTTTTTCCTTTTCGGAGCAGGATCGTCTTTGGCTGTATGGTTGCCAAAAAA	917	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.518	3.081	1.206	0.784	0.436	0.464
Raw	344.653	491.476	163.443	166.409	33.442	37.851

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368872	2258	2e-24	2145 - 2204	100	60 / 60	plus	ABC11518 ABC19976 ABC23613
MLOC	MLOC_4572.1	2282	2e-24	30 - 89	100	60 / 60	minus	ABC11518 ABC19976 ABC23613
MLOC	MLOC_4572.2	2141	2e-24	30 - 89	100	60 / 60	minus	ABC11518 ABC19976 ABC23613
JLOC1	JLOC1_2865.1	2356	8e-25	2062 - 2121	100	60 / 60	plus
Harvest21	ABC19976	536	3e-25	54 - 113	100	60 / 60	minus	ABC19976
Harvest35	U35_19891	1030	3e-25	918 - 977	100	60 / 60	plus

Contig Sequence (1030 bp)

>U35_19891 1030 Hv_44K_v2
GGGTCTATGGTTCAAGCATTGGCTCCTCTTCAGAAGGATGTTGAGACTCCATCTTTCGAA
CTGATGGATATGCCTCAAGCCGGTGCATCATCTGTCCAATCATTGCCTCTTTCTCCTCTT
GCTGACGCCTGTTCAAGAAAGGATCTGACAGCAATACATGAAATTCTAGAAAAGACGGGA
TACAAGGATGATGAGGGAACTGCAAATGAGCTTTCATTTCAGATGTGGACCAATCAAATG
CAAGACACATTAACCTCAAAGAAGAAGGGTGACAGTGCATTTCGGCAAAAGGATTTTACT
ACTGCTATAGATTGTTACTCTCAGTTCATTGAAGTCGGCACGATGGTTTCCCCCACCATT
TATGCCCGCCGTTGCCTATCATATCTGATGAATGACATGGCAGAACAGGCTCTCAGTGAT
GCAATGCAGGCACTAGTAATATCTCCGACATGGCCGACTGCATTTTACCTTCAAGCTGCA
GCGTTGCTTTCTTTAGACATGGAGAATGAAGCTCAAGATGCTCTCAAGGATGGTTGTGCC
CAAGAGACAAGTAGCAGCAGTGGACGCTGAATATGAACTGATATCTTGTCTAGAAAATGC
ACATAATTCCAGGTGCTCGCTTGATCAAAATCATTGGGATGGAAGCAGCAGCTGTGGTTC
ATCTGTCAAATTTGGCGGCCAAGTGTTCTTTGAGCTTCTTATGATTTGCGTGCGCGAAAC
TACGTCGTTCCTCCTCCGTATGTAAATATGGAACAAAGCGACAACAGAGACCAGGAAAGA
GATGCCATATACATTGAAGGGTGAATAAGCCCCGTAGACAGGAATTTTTTTTTGTGGAAG
CAAAAAATCCGTCTTTGGTTCCTCCTACCGAAAAAAGGGAGAAAAAAAAAGAGATTGTTA
ATGTACATTATTTGTAAACCTGTACAGTTTTTCCTTTTCGGAGCAGGATCGTCTTTGGCT
GTATGGTTGCCAAAAAAACTCTAAATTTCTATTACTATGATTTGACACTGTTAAAAAAAA
AAAAAAAAAA

Homology of Contig U35_19891 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58750.4	359	2e-114	protein\|protein kinase family protein, putative, expressed
Brachypodium v1_2	Bradi5g26700.1	513	7e-117
Arabidopsis v10	AT5G59010.1	489	2e-78	Protein kinase protein with tetratricopeptide repeat domain \| chr5:23820578-23823099 REVERSE LENGTH=489