barSeed - Barley Seed Development Database

Probe CUST_16088_PI390587928

Source Contig U35_21183

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16088_PI390587928	Hv_44K_v2	TGGTGTCTGTTCCAAACCATATCAGCAGTTATTTTATGCCCCTTGATGTCTGCTAAAAAA	1088	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.846	1.740	1.377	0.665	0.463	0.483
Raw	97.205	134.083	98.119	70.647	18.212	20.957

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360303	2944	3e-21	2890 - 2943	100	54 / 54	plus	ABC06919 ABC17652
Harvest21	ABC17652	1159	3e-25	12 - 71	100	60 / 60	minus	ABC17652
Harvest35	U35_21183	1159	3e-25	1089 - 1148	100	60 / 60	plus

Contig Sequence (1159 bp)

>U35_21183 1159 Hv_44K_v2
GCCGAAAGCAAAGCGGTGTTTGCTGGGATGACAAAAGATGTATGATCGAAGCTGACACCG
ACCTTTGGGATAATCTGATGATTTCATATCCAAGTATCGGGAAATTCAAGAAGAAATCTT
TTCCTCTCTTTGACTCGCTAGGAGAACTCTATGATGGGCATACAGCTGAGGGTACCTACA
GTTTCACATCAATTGCACAACCATCACAAATTGACGAAGACTTTGAAGATGAAATAGAGG
TTGAGGAAGTAAAAGAAAGTGATGACTTGGAGATGATGAATCAAGTGCAACATGATGAAG
ATGACTTGCAAATTCTGGATCAAATGGATGTTGCACATAGGAAGGAGGATGCCAATCCAA
GTGAAGAAGTGGGTCGTACAATGGCTGGTACAATGGCTGGTTCAGGAAAGATGCCCCAAA
AGAAACCCAAGAAGGAGAAGCGCAAGAACAGTGGTGATGTGATTGCTGGAGCATTATAGA
AGTATATAGAGTTGAAGAAAAGGCAAGTAGATGATGAAGCTACATATTTGGCCAATGAAA
AGGCAGATGCAACAAAATTACATGAATTCTCTATCACCAAGTGCATGGATGTGTTGAAAA
AAATGGAGGATGTGACCCGCATCGAGAAGATCAAAGCATTCAACGTCTTCAAGGATGCTG
CAAACCGTGAGATTTTCATCAATGCCGCTGATGATGATAAAGATACTGCTGTTATGTGGC
TTCGGAGCCAAATGTCCCCATGAGCCTGCAGCTATGAGATCGTTGCACTGGCAACAAGCA
CCCAATGAAGAAAAGCGCAGTCGGTGTTAGCCCCTTAGATCTGCCAGAAAGTGGTTCATC
TCATAAACTGGCATTTTACCAACACTCGTTTTGAGCCTCCTGCTGATCTTATGTCATGTA
AAATAAAGCAAACTAGGTTGACCTTATTTGGGAGTCGCTTTCTATTTTCAATGCCTACTT
GTTGCACAAATGGAATGTTTCATTTCTCCGAGGAGTCAGTTTGCTATTGATGATGACATG
ATGTTTCAATAAATTGTCGACATCGGATCTTTGATGATGCCCCTTGATGTCTGCTATTTT
ATGTCATTTGGTGTCTGTTCCAAACCATATCAGCAGTTATTTTATGCCCCTTGATGTCTG
CTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21183 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None