barSeed - Barley Seed Development Database

Probe CUST_1607_PI390587928

Source Contig U35_19892

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1607_PI390587928	Hv_44K_v2	ATCCCGTTTGTGATGGATGATGTTTGCACATTACCTAAAAAAGAACATGATTGTGCTTGA	603	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.352	2.337	1.314	0.954	0.536	0.444
Raw	32.535	55.681	24.929	25.966	4.073	3.183

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371534	3046	6e-24	2977 - 3035	100	59 / 59	plus	ABC20615
JLOC1	JLOC1_12649.1	2263	3e-24	2200 - 2258	100	59 / 59	plus
Harvest35	U35_19892	678	3e-25	604 - 663	100	60 / 60	plus

Contig Sequence (678 bp)

>U35_19892 678 Hv_44K_v2
CCAGCGTAGCAAAGGAGGACACCAGCGTCGCGAAGGACACAGAAGAGAGCACCGTAGTGC
CAGTATCGGCGAACTCCACATCTATGCCACCGCAGGCTGCCCCGAAGCCACCACCGAAGC
CGGTCATGGAGCAGAAGCTCAAGCTGGAGCTGCCGAAGGTCGCAGCCGGCGTGGCTGCCT
ACGCGCCGCTCGTCCTGAAGCGCTGCAAGTCGGAGCCTTTGCGGTCGTCCGCGCGGCTGG
CGCCCGACACGTGCTTCTGGAAGGAGGACCGGCACCGGCCCCTGAACGCCACCGGGATCG
GCTTCTGATCCCGGACAAGCACGCTGGTACGCCCGCTTTAGCTAGCTAGTTAGTGACCAT
GAAGTTTGTATGAGCCTATGTCGTGTAATAACCGTAGTGAGCTTTGCTGTTCTGTAATTG
TAGTGAGCTTGTTTTTTCCATGCTTGGTACGTGCTGTTAGTTATGTGATGTGGAGAAGGA
CACGGGATATTAAGCAAGTTACTACGTACATCAGATGAGAATTAGATTAGGGAGGAGTAT
GTGTAAAAATCTCTGAGGTTTGCTTTGATATGCTTTGTTGGGTGTGCTAAAAAAAAAAAA
AAAATCCCGTTTGTGATGGATGATGTTTGCACATTACCTAAAAAAGAACATGATTGTGCT
TGAAAAAAAAAAAAAAAA

Homology of Contig U35_19892 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None