barSeed - Barley Seed Development Database

Probe CUST_16073_PI390587928

Source Contig U35_45144

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16073_PI390587928	Hv_44K_v2	GGGGCCGGAGCGGGAGCGGTTCGTGGTGCGCGCCGACCGTGCCAACCACCCGCTCTTTCG	173	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57940.2	874	7e-23	195 - 251	100	57 / 57	plus	ABC38504
MLOC	MLOC_57940.1	1200	7e-23	516 - 572	100	57 / 57	plus	ABC38504
JLOC1	JLOC1_37621.1	936	4e-23	213 - 269	100	57 / 57	plus
Harvest21	ABC43619	233	3e-25	174 - 233	100	60 / 60	plus
Harvest21	ABC38503	437	1e-23	167 - 223	100	57 / 57	plus
Harvest35	U35_45144	233	3e-25	174 - 233	100	60 / 60	plus
Harvest35	U35_26692	877	1e-23	167 - 223	100	57 / 57	plus

Contig Sequence (233 bp)

>U35_45144 233 Hv_44K_v2
GCGACCCGTCTAGAGTCTAGAGTCGGCCGACGTCCACCGGCGGCATACATGGCGGCTAGC
AAGGGCGCGAGGAAGAGCCTGGTGTCGAGGACGCTGGAGCGGTGCCGGTCCGGGCTGAAC
AGCGGCGGCCGGTCGTCCGCGGCGGTCGCGCCGGGGTGCTTCTCGGTGTACGTGGGGCCG
GAGCGGGAGCGGTTCGTGGTGCGCGCCGACCGTGCCAACCACCCGCTCTTTCG

Homology of Contig U35_45144 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None