- Probe CUST_16072_PI390587928
- Source Contig U35_45145
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16072_PI390587928 | Hv_44K_v2 | CTTGTAACGTGCCTGTTTCATTAATAAGCAATGAGAAAATGTTGTGGTTCGCTTTACTTA | 369 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.123 | 0.168 | 1.632 | 3.579 | 1.356 | 1.170 |
| Raw | 3.676 | 9.521 | 100.078 | 324.979 | 45.986 | 41.623 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC43623 | 445 | 3e-25 | 370 - 429 | 100 | 60 / 60 | plus | ABC43623 |
| Harvest35 | U35_45145 | 445 | 3e-25 | 370 - 429 | 100 | 60 / 60 | plus |
Contig Sequence (445 bp)
>U35_45145 445 Hv_44K_v2 AGCGGCGCACACGCTCCGTCAGTGCTAGACCTTCCCCCGATCACAGGCTTTTATCTTCCA CCGCGACACGCGCCCCAGGTTGCAAGCACGCACACACCGGTGGTTGCTGGCGCCCATGAG CCCGCGGTGCATGGCGTCCCGGCCGTGCATGCGCATGTCGGTGCGGGTGACACTGGAGCG ACTAAGTCGAATGGTGCCACTGCACCTCCCGCGGGAGAGCAGCCGGCGAGCCCGAGCTCG GAGAGTTTGGGGTATGGCACTCCACCCTAGCCGCTGCGGTGGCAGCGCGACAGTATCATG CTCAACAGCAGCGCGACAGTATGGTTTTGCGGCCCTTGTGGGTCGTTCGTCATGTCTTTC AAATGTAAGCTTGTAACGTGCCTGTTTCATTAATAAGCAATGAGAAAATGTTGTGGTTCG CTTTACTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_45145 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |