barSeed - Barley Seed Development Database

Probe CUST_1606_PI390587928

Source Contig U35_19893

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1606_PI390587928	Hv_44K_v2	ATATACAAGCGTCTGGATGGTAAGTGGATCCTCTGCATTTCTTTCTTCAAACGCAGAGGC	764	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.139	2.449	1.267	0.763	0.310	0.319
Raw	427.033	772.073	343.474	326.848	46.298	51.844

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13115.2	1849	7e-23	1741 - 1800	98	59 / 60	plus	ABC11747
JLOC1	JLOC1_8847.2	1871	4e-23	1715 - 1774	98	59 / 60	plus
JLOC1	JLOC1_8847.1	1896	4e-23	1740 - 1799	98	59 / 60	plus
Harvest21	ABC11747	832	3e-25	765 - 824	100	60 / 60	plus	ABC11747
Harvest35	U35_19893	832	3e-25	765 - 824	100	60 / 60	plus

Contig Sequence (832 bp)

>U35_19893 832 Hv_44K_v2
GTGCCTAAGCAAGACACTGGATCTTTGAGCCAAGAACCATCAGCTACTGTGGTGCCAGTT
AAATCCGCTCAACCTGTATTAGTATCATGCAGACACGTGGATCAAGATGTGCATGTTGAA
GGAAAATCTGTCCCTGAGTTTAACAGTGATTCTGAATCTTCAAGTGGAAGCAAGGACTCA
TCAGGCCAATCTCCGCGTGGTTCTCCAGCTGCCATGGGTGAGACTGATATAACATCAGGC
TACAAAGAACACTCAAATGCTGCTAATAGCAACCAACATATTTGTAAGGAACCATCAGAT
AACCCAGAACAGTCTGAGCAACCAAAGACAGAGCCTAACATCCTGAAAGGAGTTGATGAC
CCAATGACAGGAGCCTCAGGAACTCCACCAGCCGCAGAGGCCTCAAGTGCAACTCCTAAT
ACCCTAGATGATGTTCAGTCTACTGTTAAGGAAGATGAACTGAAGGTTGACAGCCAAGAA
AACAGGCTGACAACGACAACATAAATCCTGCTGTTTGGTTTATGCTGTTTCACCAAGCTT
ACAAGAATCTCAACGTAAAGTGGTGCCTTTCTGTGGATGGTTGAACCCTAGAGCAGACTA
GCATTATTCATTTTTTACTCTTCTGCTCTGACTTTATACGGTCAAAGGTTCAGAGGAGAA
ACAAATTCATAGAATATTTTTGACCTTGCAGCTAGTGCTTATGGCAGTGAGTAGAACGGG
AAAAACATGTATATAGATTTTAGCATTTTAGGAGAATGGCAAATATATACAAGCGTCTGG
ATGGTAAGTGGATCCTCTGCATTTCTTTCTTCAAACGCAGAGGCGCTACTAG

Homology of Contig U35_19893 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None