barSeed - Barley Seed Development Database

Probe CUST_16068_PI390587928

Source Contig U35_21190

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16068_PI390587928	Hv_44K_v2	TGAGCTTCAATGGCAGTTGAGACTCTTTTCGTCCTTGTTGTAAATGAAAATGAATTGAAG	793	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.316	1.306	1.056	1.009	0.467	0.476
Raw	3502.480	5393.833	3877.383	5832.753	946.408	1045.077

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65073.1	897	2e-24	812 - 871	100	60 / 60	plus	ABC15028
JLOC1	JLOC1_42793.1	1169	8e-25	765 - 824	100	60 / 60	plus
Harvest21	ABC15028	870	3e-25	794 - 853	100	60 / 60	plus	ABC15028
Harvest35	U35_21190	870	3e-25	794 - 853	100	60 / 60	plus

Contig Sequence (870 bp)

>U35_21190 870 Hv_44K_v2
GCTTCAGCTCCGGCTCGCAATACGCCGCCGCCGCCGCCGCCGCTCCCGCTCCCGCTCCCG
CATCTCCCATCCTCGCTCGGTGCATAATCAGGTCGCCGCTCCCCCTGATTACACAGAACG
AGACACTCGTCGGTCGAATTCGCGCCGCCCCGGTCCAGTCCAGCCCAAATACTGCATCGA
TCTATCTACTTTGCTCCCGTGCACGGCAGCGGCAACGATGAAGATAGAGAAAGCAAATGC
AGGACATCTCACCAACTTCGAAGTTCTCGACTTCTTACGGACTAGAGGTGCAAAAATTGA
TCCCATGGGATGTTTGGGGGCTGTTGCTGCATCAGAGTGTAAGGTATATGAGTACCTCCT
AAAAACTCCTGCTTGCAACCAGACAAGGGAATCAGTTACTGAATTTGCAAACAGATGTGA
GGGCTTCAAGCTTACTGACGCTGACAAGCAAAACATTATCAATTGGAGGCCAGCCTCAGC
AGCTGATGTTTATGCGATGGTAGAGGAGTGTGGGAAAAGATTTTGCAAGGATGAGCGAGG
AATGCCGCAGGATGAAGAGGACCGTGCCAATGAGCTTGTGGCTCTTGTAGACGAGGTTTT
CCCAGCACCACCTGCTAACCCAGAGGATGAAGTAGATGTGGATATGAAGGACGTCTGAAA
GGGTTTGATTCTGGGTGAAGAATACAGATTGTCGGATTGGCCTGTAATTTATCTGCATGC
ATGTCCTGGCATAACAGCTCTCTGTGGATTGTGGCATAAGGCCATCTTGTTTGAGACATC
ACAGTTTGACCTATGAGCTTCAATGGCAGTTGAGACTCTTTTCGTCCTTGTTGTAAATGA
AAATGAATTGAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_21190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g30510.1	141	7e-71	protein\|DNA-directed RNA polymerase III subunit RPC9, putative, expressed
Brachypodium v1_2	Bradi4g07190.1	218	7e-74
Arabidopsis v10	None