barSeed - Barley Seed Development Database

Probe CUST_16065_PI390587928

Source Contig U35_21193

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16065_PI390587928	Hv_44K_v2	AAATCTTGTCACAGCTAAATCTACACGGAGAGGGTGCCATTCTAAAGGTCAGCTTAGGAG	721	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65264.3	1633	2e-24	1130 - 1189	100	60 / 60	plus	ABC14281
MLOC	MLOC_65264.1	1656	2e-24	1166 - 1225	100	60 / 60	plus	ABC14281
MLOC	MLOC_65264.4	1415	2e-24	925 - 984	100	60 / 60	plus	ABC14281
MLOC	MLOC_65264.2	1646	2e-24	1156 - 1215	100	60 / 60	plus	ABC14281
JLOC1	JLOC1_42936.1	1696	8e-25	1130 - 1189	100	60 / 60	plus
Harvest21	ABC14281	1230	3e-25	450 - 509	100	60 / 60	minus	ABC14281
Harvest35	U35_21193	1230	3e-25	722 - 781	100	60 / 60	plus

Contig Sequence (1230 bp)

>U35_21193 1230 Hv_44K_v2
CGACTCCGCCGCCCAGCCGATGCTGCGGACGCAGTACTGATGCAGCTCGCCGACCAAGTA
CCCGAGGAACTGTGGGCAATGAGACTGGGCTTGAGGTTGCTTCAAGAGAGGACAAAATTC
GATTCGTTTTGGTGGCCATATATCGCGAACCTGCCAGAGACCTTTACCGTACCAATCTTC
TTTCCAGGGGAAGACATAAAGAACTTGCAATATGCTCCTCTCCTCCACCAGATAAATAAA
AGATGTCGTTTCCTTCTCGAGTTTGAGAAAGAGGTAAAACAGAAGCTTGGCACTGTGCCC
TCAGGAGATCATCCTTTTTGTGGACAAGATGTACACTCGTCCTCCCTTGGATGGGCTATG
TCCGCAGCGTCTTCACGAGCATTCCGTCTGCATGGTGAAATCCCAATGTTGTTGCCCCTT
GTTGATATGTGCAACCATAGTTTTAGCCCGAATGCTAGGATTGTCCAGGATGGAGATGTC
GAGAGCCCTGATATGTCAGTTAAGGTTATTGCTGAGACGCAGATTGATCAAAACGCTGCT
GTTACACTGAACTATGGTTGCTACCCCAATGATTTTTATCTTCTTGATTATGGATTTGTA
GTAACATCGAACCCATACGATCAAGTGGAACTGAGCTATGATGGGAATCTTCTCGATGCT
GCTAGCATGGCAGCAGGGGTTTCTAATCCCAACTTCTCAACACCAGCCAAGTGGCAACAG
GAAATCTTGTCACAGCTAAATCTACACGGAGAGGGTGCCATTCTAAAGGTCAGCTTAGGA
GGTCCGGACATAGTAGATGGGCGCTTATTAGCTGCGCTGCGAGTTCTTCTTGCAGCTGAC
CCAGAGGCTGTGGGTAAGCACGATCTGAAAACTTTGATGTCACTTAGTGCGAAAGCTCCT
CTAGGCCCTACTGTCGAAGCCTCTGCGTTCCGAACTGTTCTCGCGCTTTGCGCCATTGCC
CTCCAACACTTCCACACCAAGATAATGGATGACCAGGCCATCCTAAAGGGAGAACCCCCT
CTTACTACTGAACTGGCCGTCCAGTTTAGATTGCAGAAGAAGCTGATGCTCGTCGACATA
ATGCAGAATCTTAGTCGGAGAATCAAGACGCTGTCTCCGGAGAAATCTACTGCCTAGGAT
GTTAACAATTTGTGATAACTCTCTTTTGGACAATCAACTACTATCTTTCCTGGATATGTA
ACAAATAAATCCCCAATTTTATCTTTTACC

Homology of Contig U35_21193 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50100.1	487	0.0	protein\|SET domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi3g56840.1	486	0.0
Arabidopsis v10	AT1G24610.1	476	1e-160	Rubisco methyltransferase family protein \| chr1:8720906-8722711 REVERSE LENGTH=476