barSeed - Barley Seed Development Database

Probe CUST_16058_PI390587928

Source Contig U35_33176

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16058_PI390587928	Hv_44K_v2	ATGGTCCATTTATCACGGGATACTGCCCATGATCAAATAGACAATCACTTCTACGCTTCT	730	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23676.2	3681	2e-24	3413 - 3472	100	60 / 60	minus	None
MLOC	MLOC_23676.1	1668	2e-24	290 - 349	100	60 / 60	plus	None
MLOC	MLOC_23676.3	3127	2e-24	208 - 267	100	60 / 60	plus	None
JLOC1	JLOC1_16340.2	3364	8e-25	2868 - 2927	100	60 / 60	minus
JLOC1	JLOC1_16340.1	1841	8e-25	1345 - 1404	100	60 / 60	minus
Harvest35	U35_33176	799	3e-25	731 - 790	100	60 / 60	minus

Contig Sequence (799 bp)

>U35_33176 799 Hv_44K_v2
TATAGGGCGAATTGGGCCCTCCAGAGCATGCTCGAGCGGCCGCTGGACGAATGGCAGTAC
AACATCCAGGAATCAGCCTCAGGATAAGTGAAGTAAATTTCACCATCCCATACAGCGTCA
TCCGCCAGCCAAAGCATCCTCGACAGCAGTCTCTCGTCTATCTAAGAAGAGACACATGTC
CCTGATCTAGCAGAGCACCTCTAACCGGTACCGGTACACAAGCGAGTGATCGTCCATGGA
GATAGCTCGATAACATAATGCTGATTCGAAGCCAAGCTCAAAAGTCCAACACCGTCGAAG
TGTGGTTCATCAATGGTCCCAAAGCACTAGGAGCAAACTTCCTGGCAAAGAGGTAGCACA
CAGAGGTGTGCTTCGAGTTGTAGAGGCACTGCGTACCGTTGTTCCTGATGAGCGGCCGCT
GCACTTCAGAATTCCAAGGGCTCTCTACACTCTGCACTGACCAACGCGATCCGGCCTCAC
GTGGAGCTACTCAGGACCAGCCCATACTGCAAGAGGATCTACTCTCGAGCTTCGCTGAAA
AAGTGATGGTCTGATGAGACCATCTCACCATGTGTAACAATAAAGATAGTTTGTCTTGTG
CTATTTTTTCGGATTCAAAAGGGATAAAAGTGATCTCACCATGTAGATCTTGTATAGATC
AAAATTTATTTGGTCATGTACTTCTATGTGCACCTTTATTTGATGCACTCTTCCGAGCGG
CCGCTGCGGGAGAAGCGTAGAAGTGATTGTCTATTTGATCATGGGCAGTATCCCGTGATA
AATGGACCATGTATGTACA

Homology of Contig U35_33176 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None