- Probe CUST_16042_PI390587928
- Source Contig U35_45167
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16042_PI390587928 | Hv_44K_v2 | TGAGAAGAGCGGTGCCACTGGCCCTCGAGGTAGAGGACGACCCAAGGAAAGAGGAGCTGA | 375 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.868 | 1.428 | 1.329 | 1.116 | 0.689 | 0.707 |
| Raw | 165.757 | 394.561 | 333.046 | 438.070 | 95.839 | 106.991 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4910.1 | 1821 | 2e-24 | 1641 - 1700 | 100 | 60 / 60 | minus | ABC49987 |
| JLOC1 | JLOC1_3115.1 | 922 | 8e-25 | 197 - 256 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3114.1 | 4876 | 8e-25 | 3414 - 3473 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC43657 | 448 | 3e-25 | 376 - 435 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45167 | 448 | 3e-25 | 376 - 435 | 100 | 60 / 60 | plus |
Contig Sequence (448 bp)
>U35_45167 448 Hv_44K_v2 CACGCTTCGCACGCAGCGCAGCGCAGGCCTCGACCATGTGGCGCACGACCGCCTCCCGCC TCCGCGCGCATTGCCGGCCCCACGCGCTCCGCCGCCTCTACTCGCCGCCGCCGCCGCGGG TGGACCCGCCGGTCACGCCGTCCGAGGCGAGGAGGCTGGTGCGGCTCGTCGGGGTGGAGG CGCTGAAGCGGCGGCTGCGGGACGGGCCCCGCGAGGCGATCGGCTACGGGGAGCTCCTCG ACGCGTGCGTGGAGGCCGGGGCGGCGCGCACCCGCGACGACGCGGAGGGGCTCGCGCGGG CCATGGACGACGCCGGCGTCCTGCTGCTCTTCAGGGACAAGGCCTACCTCCACCCCGAGA AGGTGGTGGACCTGGTGAGAAGAGCGGTGCCACTGGCCCTCGAGGTAGAGGACGACCCAA GGAAAGAGGAGCTGAGGCAGCTCCAGGA
Homology of Contig U35_45167 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g02880.1 | 283 | 2e-51 | protein|E2F-related protein, putative, expressed |
| Brachypodium v1_2 | Bradi4g44077.1 | 268 | 1e-52 | |
| Arabidopsis v10 | None |