barSeed - Barley Seed Development Database

Probe CUST_16034_PI390587928

Source Contig U35_33197

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16034_PI390587928	Hv_44K_v2	AAAGCACTACTTCATATTGGTATACTCCTATATAACAAGAAGGTCGAGGGTTTTGTTGCG	3	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71682.6	1379	7e-23	127 - 186	98	59 / 60	minus	None
MLOC	MLOC_71682.5	2542	7e-23	208 - 267	98	59 / 60	minus	None
MLOC	AK355639	1128	3e-21	1070 - 1126	98	56 / 57	plus	ABC10403 ABC10404 ABC21749
JLOC1	JLOC1_47656.3	767	4e-23	541 - 600	98	59 / 60	plus
JLOC1	JLOC1_47656.2	693	4e-23	467 - 526	98	59 / 60	plus
JLOC1	JLOC1_47656.1	1105	4e-23	879 - 938	98	59 / 60	plus
Harvest35	U35_33197	717	3e-25	4 - 63	100	60 / 60	minus

Contig Sequence (717 bp)

>U35_33197 717 Hv_44K_v2
TATCGCAACAAAACCCTCGACCTTCTTGTTATATAGGAGTATACCAATATGAAGTAGTGC
TTTTTTTGGCACCTAAATAAACGTGTCACAATGTCTGAACAACAACAGCAACAACACCAC
CGACGTCGGTCATGGTTATATCACAGATGACTCAGGATTAGTTGCTTCCAAAATTGGTAG
CAAACCAGGTACCGGCTGGTGCGTTCTTCTTCTATGCATTTGTTGCTGGTAACATGTCTT
CGCACTCGGTCAGATGATGCCTCCACCAGCTTGGAATAGCATGCATTGACGGGAGCACTT
GATGCACATATCGTGGATGCAGTTGGGCAGCACAGCCCTGCTGTTTAACTCCATGCAGAC
CCCACACTCCTCTTCTACCCCGGCATCGATCTCGGAGACCGGCCTCTTGCAGCGGCCGCT
GGGAGGTCCAGAGCATGTTATCACTGGAGAAAGAAAGAAAGGATGTGACTGGAAATGATG
CAAGATATATTTATTGTCAATAGAATGTCGTAATGCTGTCTGTAGCATAATTAGCTCCGC
ACCTGATGAGTTGGTAGCTATCTCATCTTCATCTTTGTACTGTCTGGAATCTTTTGTCGG
CCGGAGGTGTGCTATTTGTTAGAGTTATAATACAAGTTATGTATCCTTCTGAGCGGCCGC
TAACAACTGCTCCTCGCTCGTGCGATCTTGAAATGGCTGCGTCGACAGATTTTGGCA

Homology of Contig U35_33197 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None