- Probe CUST_16030_PI390587928
- Source Contig U35_45171
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16030_PI390587928 | Hv_44K_v2 | CGCAGCTCGTCACCGACGAGTTCCCGGCCAAGTACAAGGCCAAGAAGTTCAAGGACTACA | 271 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.136 | 0.466 | 0.871 | 1.748 | 1.262 | 1.541 |
| Raw | 87.971 | 483.575 | 737.425 | 2379.371 | 591.645 | 786.433 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_79641.2 | 1235 | 2e-24 | 347 - 406 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_79641.1 | 1220 | 2e-24 | 348 - 407 | 100 | 60 / 60 | minus | None |
| MLOC | AK367241 | 1294 | 7e-23 | 1047 - 1106 | 98 | 59 / 60 | plus | None |
| JLOC1 | JLOC1_53033.1 | 1302 | 8e-25 | 776 - 835 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43664 | 331 | 3e-25 | 272 - 331 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC16522 | 817 | 1e-23 | 400 - 459 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_45171 | 331 | 3e-25 | 272 - 331 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22295 | 1056 | 1e-23 | 639 - 698 | 98 | 59 / 60 | plus |
Contig Sequence (331 bp)
>U35_45171 331 Hv_44K_v2 TACGAGGCCTACTGTGGCCACATGCGGCGGCTCACGCGCGAGCTGTTCGAGCGGCTCTCG GCGGAGCTGGGGCTGGAGGGGGGCGCCATGGCGGAGGCGTTCGGCGGCGACGACGTGGTG CTCCTCCAGAAGATCAACTTCTACCCGCCGTGCCCGCAGCCGGAGCTCGCGCTCGGCCTG GCGCCGCACACCGACCTGAGCCGGGAGAAGACGCGGATGTCCTGGCCGGTGTTCGTGGAG CCGCCGCCGGAGCACGTCGTCGGGCCGCACCCGCAGCTCGTCACCGACGAGTTCCCGGCC AAGTACAAGGCCAAGAAGTTCAAGGACTACA
Homology of Contig U35_45171 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |