barSeed - Barley Seed Development Database

Probe CUST_16025_PI390587928

Source Contig U35_45180

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16025_PI390587928	Hv_44K_v2	GACTGTGGATGGAGTCTTCTTATTTTTGTTGTATTTTCTCCTTGCTCTTGAAATGTATGT	365	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38014.1	947	2e-24	178 - 237	100	60 / 60	plus	ABC01219
JLOC1	JLOC1_24677.1	598	8e-25	172 - 231	100	60 / 60	plus
Harvest21	ABC43684	450	3e-25	366 - 425	100	60 / 60	plus
Harvest21	ABC01241	1115	1e-23	121 - 180	98	59 / 60	minus
Harvest21	ABC01219	1230	1e-23	960 - 1019	98	59 / 60	plus	ABC01219
Harvest35	U35_45180	450	3e-25	366 - 425	100	60 / 60	plus
Harvest35	U35_13845	1274	3e-25	1001 - 1060	100	60 / 60	plus

Contig Sequence (450 bp)

>U35_45180 450 Hv_44K_v2
GATTTTGGCGCCGCTTCCGATCGGGTTCGCGGTGTTCCTGGTGCACCTGGCGACGATCCC
CATCACGGGCACCGGCATCAACCCGGCGAGGTCCCTCGGCGCCGCCATCATCTACAACAA
GAAGCAGGCGTGGGACGACCACGTAAGAATCAATCATTCATGAGTTTAATATAAGCTTGA
AGATGATCATGCATGGTAATTTGGCGCTGGCTAGAGACTAATCGATCGGTGATCTTCTTG
AAACTTGGCAGTGGATCTTCTGGGTGGGTCCGTTCATCGGCGCGGCGCTGGCGGCCATAT
ACCACGTGGTGGTGATCAGGGCAATCCCCTTCAAGAGCCGCGACTAGTCGACAAATCAAT
CTGCCGACTGTGGATGGAGTCTTCTTATTTTTGTTGTATTTTCTCCTTGCTCTTGAAATG
TATGTTTCATCATATAGCTTATTTTCTAGT

Homology of Contig U35_45180 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None