barSeed - Barley Seed Development Database

Probe CUST_16022_PI390587928

Source Contig U35_45183

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16022_PI390587928	Hv_44K_v2	ATCAGAAGAAAGAAAGGCCAGGCCAAGAGGTTAAGGGATCGATCTTTTTCCGAGGTTTCT	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56286.1	3563	2e-24	3172 - 3231	100	60 / 60	minus	ABC33830
MLOC	MLOC_56286.3	1730	2e-24	1339 - 1398	100	60 / 60	minus	ABC33830
MLOC	MLOC_56286.4	1763	2e-24	1368 - 1427	100	60 / 60	minus	ABC33830
MLOC	MLOC_56286.2	1915	2e-24	1520 - 1579	100	60 / 60	minus	ABC33830
JLOC1	JLOC1_36390.2	1775	8e-25	256 - 315	100	60 / 60	plus
JLOC1	JLOC1_36390.1	1365	8e-25	131 - 190	100	60 / 60	plus
Harvest21	ABC43687	437	3e-25	15 - 74	100	60 / 60	plus
Harvest35	U35_45183	437	3e-25	15 - 74	100	60 / 60	plus

Contig Sequence (437 bp)

>U35_45183 437 Hv_44K_v2
AAGGCATCCACCGCATCAGAAGAAAGAAAGGCCAGGCCAAGAGGTTAAGGGATCGATCTT
TTTCCGAGGTTTCTGTCCTCGAGGAATTTAGCACCGCTCGGGATTCTCAGGGCATGATGA
TCGGTGTAGCAGGCTTCCGCCGGCACGCGGGCCAGCTCTTGAGTAAAAGCAACGGGTTTA
TTGCGGCGTCCCTGTCCGCGGCAAGCTGCGCGGACGAGGTGGAGAAGGCCGAGGGGGCGG
GGTGCCGGGACGACGCGGCGGCGCTGCGGCTCAAGTGGATTGCCATGGCGGCGATACTGG
TGTCCGGNGTGATGGGCGTGGGCCTACCGCTTGCCGGGCGGAAGCGGCGGACGGTGGAGA
CCGGCAGCGCCGTCTTCGTGGCCGCCAAGGCTTTCGCGGCCGGCGTGATCCTGGCCACAG
GGTTCGTCCACATGCTG

Homology of Contig U35_45183 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None