- Probe CUST_16019_PI390587928
- Source Contig U35_45186
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16019_PI390587928 | Hv_44K_v2 | TGCCTTTCTTTGATGTTGCCTATCAAGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCAT | 112 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.304 | 0.324 | 1.493 | 2.117 | 0.957 | 1.178 |
| Raw | 165.676 | 272.450 | 1125.069 | 2536.250 | 399.919 | 533.201 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_16420.1 | 1594 | 2e-24 | 708 - 767 | 100 | 60 / 60 | minus | ABC00651 |
| JLOC1 | JLOC1_11301.1 | 1809 | 8e-25 | 824 - 883 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43694 | 172 | 3e-25 | 113 - 172 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00651 | 1748 | 3e-25 | 862 - 921 | 100 | 60 / 60 | plus | ABC00651 |
| Harvest35 | U35_45186 | 172 | 3e-25 | 113 - 172 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_261 | 1723 | 3e-25 | 892 - 951 | 100 | 60 / 60 | plus |
Contig Sequence (172 bp)
>U35_45186 172 Hv_44K_v2 TAGCCCGAATTCCCGAACAATTCCGTGATGAGGCAATCCGTGCAATCGGCTATTCTATCT TTCTGCAAGAACAACCCCAACATGGCAGATCTGATTGAAGAGAAAAAACATATGCCTTTC TTTGATGTTGCCTATCAAGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCAT
Homology of Contig U35_45186 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |