- Probe CUST_16018_PI390587928
- Source Contig U35_45188
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16018_PI390587928 | Hv_44K_v2 | CCCATGTTTATTTCCACTGTCTGCTTATTAGTAGGATGAACTGTATCGTGAAACAGAGTT | 0 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK357536 | 689 | 2e-24 | 549 - 608 | 100 | 60 / 60 | plus | ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC27134 ABC27412 ABC29158 ABC29958 ABC30671 ABC32179 ABC43349 |
| MLOC | MLOC_24700.1 | 401 | 2e-24 | 184 - 243 | 100 | 60 / 60 | plus | ABC00122 ABC00234 |
| JLOC1 | JLOC1_16958.1 | 420 | 8e-25 | 177 - 236 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43698 | 414 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC34843 | 656 | 3e-25 | 516 - 575 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00234 | 652 | 3e-25 | 537 - 596 | 100 | 60 / 60 | plus | ABC00234 |
| Harvest35 | U35_45188 | 414 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_13698 | 680 | 3e-25 | 537 - 596 | 100 | 60 / 60 | plus |
Contig Sequence (414 bp)
>U35_45188 414 Hv_44K_v2 AACTCTGTTTCACGATACAGTTCATCCTACTAATAAGCAGACAGTGGAAATAAACATGGG GATTTCACTTCATCTAAGAAGTCTCCACAGAGAGACACCTGCGCGCAGTCTTACAAACAC ATCGGAATATGCGGGGAGCTACAAAGAGACTAGCCGCCGAAGCCGTAGAGGGTGCGGCCC TGGCGCTTGAGGGCATAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCG GTGTAGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTC TCCTCGTAGATGAGGCCGGAGATGCGCTTCACGCCGCCCCTCCTCGCCAGGCGACGGATG GCAGGCTTGGTGATGCCCTGGATGTTGTCGCGCAGCACCTTACGGTGGCGCTTG
Homology of Contig U35_45188 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g39410.1 | 104 | 1e-55 | protein|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi5g19360.1 | 104 | 6e-56 | |
| Arabidopsis v10 | AT5G59970.1 | 103 | 7e-56 | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103 |