barSeed - Barley Seed Development Database

Probe CUST_16017_PI390587928

Source Contig U35_45191

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16017_PI390587928	Hv_44K_v2	AGTGATTTATTACTGAATGTTTCCTTCTGGAACAGAATGAGGAGAGCGATGATGACCCTG	409	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78328.3	3863	7e-23	1411 - 1470	98	59 / 60	plus	None
Harvest21	ABC43708	472	3e-25	410 - 469	100	60 / 60	plus
Harvest35	U35_45191	472	3e-25	410 - 469	100	60 / 60	plus

Contig Sequence (472 bp)

>U35_45191 472 Hv_44K_v2
CGCTGCCGCGAGCTCACCGTCCCCATCCCCCGAGTCCACCTACTCCGAGCCGACCGTCGC
CTCCTTCTCTCAAGCATCTGTCCCTGCAATGCGGTACACCGATAGTATATACCAAGATGA
ATTTGGGCTAGAAGACTTTGCAAACATCCTCTCCGTCAGTATAGTCTCCTCATATGTAGG
CTTCCCAGTCAATGTCTATGGCCGCATCATTGCCAGAGACAGCATTGACTACAGGTGCAT
TTATCTCTTTCACCACAATAGAGATGATTGCCAGCGTCTCACCGAGGGTGGAATGCTGAT
GTTAACTGGCCCAAGTGGAGTGTACCGCATTAGCGCAGGAAGCCAGGTGGATGGGTTGTT
TCTTTCTTTGGCTATCCGATCTGATAGGAGTAATATGAAGTTGCGCATTAGTGATTTATT
ACTGAATGTTTCCTTCTGGAACAGAATGAGGAGAGCGATGATGACCCTGTCC

Homology of Contig U35_45191 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None