barSeed - Barley Seed Development Database

Probe CUST_16011_PI390587928

Source Contig U35_4100

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16011_PI390587928	Hv_44K_v2	AGAATCATTCACAATGTCGGTGACCATGTACTGTCTGCGTCATGAGCTTGGTTTTGGTCT	1270	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.959	2.110	1.208	0.643	0.222	0.247
Raw	1152.475	1852.785	953.620	781.213	97.280	117.267

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64286.1	612	2e-24	45 - 104	100	60 / 60	minus	ABC09194
JLOC1	JLOC1_42200.2	707	8e-25	516 - 575	100	60 / 60	plus
JLOC1	JLOC1_42200.1	767	8e-25	576 - 635	100	60 / 60	plus
Harvest21	ABC09194	1355	3e-25	1271 - 1330	100	60 / 60	plus	ABC09194
Harvest35	U35_4100	1355	3e-25	1271 - 1330	100	60 / 60	plus

Contig Sequence (1355 bp)

>U35_4100 1355 Hv_44K_v2
TCGACTCTCGAGTCGGGAGGGGGTGACGCACCGCACCGGTAGGCCGCTTCTCCCCGCCGG
CAACCAGAAAAAGGAAGCCATGTCGCGATGGCGCGCCGTCGCCTCCCGCCTCTCCGCCTC
CCACTTTTTCTCTAGGGCCTTCTCCAAGCCTCCCTCGCCACTTCCTCAGCCTCTGTCCAG
GACCTTCTCCAAGGCCGCCTCCGCCGCCGCCACGTCGCACAGCCCTAGCGCGGCCTCCTC
CGCCAGTCCGTGGCCCGAGGTCCGACTGAATTCTATGTTCCTGTCCAAGCCCTCTTCACT
GGCATTGCCTCCTGATTCTCCTCTTAGAGCGGAAGATCCACACTATGAGGGCATTAAGCG
CTTGATGCTCACGCTGCTCTTGTTCTACAGTAAGCAAAGCAAGTCCATCAGAGGAGCAAA
CACTGTTTATCACCGCATCACTTCTCATGTTGACAAGCCTGATATCTATGAAGTGTTTCA
GTTGGAGAAAACATTTAAAACAACATTTTCGTTGCTTGTTCTCCATATGTGGCTCGTTCT
ACGTCGCTTGAAGGAAGAAGGAAAGGATGGTGTTAAATTTGGACAGTACATCTATGAAAC
TTACAATCATGATGTAGAGCTCAGAGTTTCTAAGGCTGGGGTCAACTTGTTATTGATAAA
ATGGATGAAAGAGCTAGAAAAAATATTCTATGGGAACATTGTGAAATATGATACTGCAAT
AAGCCCAGAAGCAAGCCAGGATGATCTTGTAAATGTCATCTGGAGGAATGTGTATGCTGA
CGAAGGTTCAGAGCCTATGGATGCAGCTGCTACCCCTGCTGTCCAGGCATTGGCAAGATA
TACTCGGAGGGAGGCAACTTGTCTATCATTGACAGATAAAGAAGCTATGTTCTCTGGCAA
CTTCAATTTTACGACGGTTTTGCCAACCGTCCCAAGCCCGGCAAAGCGACGGCGTTAAGC
GCTGGCATTTGTAGATCAGTATTCCTTATGAAGGCTGGCTATACATGGACAAGGAAGACT
GAAAGTCCTATCATCATTACAAATAATACAAATTTTTTCAGTATTTATTTATGGACAAAT
CTCAGCATTTCAGGCCATTTTGGTGGCTACAGCTGCCTCTAGCTAGGAATCTCCTTTATG
TTTATCGTGTGTGAGCATTGCATTGATGGGCTGCCCTCTTGGAATAGAGTACACGGTGGA
AACATTTTCCTGGTTGAATGCTTGTACTGTGCTGTAGTATTTTACCATTTTCATTGCTGA
TATGGACTTGAGAATCATTCACAATGTCGGTGACCATGTACTGTCTGCGTCATGAGCTTG
GTTTTGGTCTCCTGGGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_4100 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g30790.1	303	9e-136	protein\|ubiquinol-cytochrome C chaperone family protein, putative, expressed
Brachypodium v1_2	Bradi1g27180.1	299	8e-151
Arabidopsis v10	AT5G51220.1	281	8e-88	ubiquinol-cytochrome C chaperone family protein \| chr5:20821405-20823125 REVERSE LENGTH=281