barSeed - Barley Seed Development Database

Probe CUST_1600_PI390587928

Source Contig U35_19899

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1600_PI390587928	Hv_44K_v2	GTAACAAATCAGCTTATTGTCAGCGAGGCCGCAAGCATATACAGTATTAATCAGAAAAAA	1094	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363627	1989	7e-23	1919 - 1975	100	57 / 57	plus	None
MLOC	MLOC_16979.3	1969	7e-23	1901 - 1957	100	57 / 57	plus	None
MLOC	MLOC_16980.1	3560	7e-23	2395 - 2451	100	57 / 57	plus	ABC09125
JLOC1	JLOC1_11726.1	1784	4e-23	1075 - 1131	100	57 / 57	minus
Harvest21	ABC13699	1159	1e-23	1095 - 1151	100	57 / 57	plus
Harvest35	U35_19899	1165	3e-25	1095 - 1154	100	60 / 60	plus

Contig Sequence (1165 bp)

>U35_19899 1165 Hv_44K_v2
TAACGGGGAGTCTCCTCCTGGTTTTCTTGGTTTTGCAGTAAATATGATACATATGGACCA
GACATACTTGAGTTGTTTCACGCCCCATGGCCATGGTCTTAGGGAGACTTTGCTTTACAG
TTTGTTTTCTCATTTACAAGTTTATAAGACTACAGCTGATCTACGGCGTGCTATTCCCTT
GATAAATGATGGTGCGGTTTCTCTGGATGGTAGTATATTGAGGCCTAATGGTTCATTCTG
CCTTGGTGATAGGAAAGATGTAGAAGTGAAATTTACTGTAGCTTTAAGCTCTGGGGATTC
AAACACACCTGGAAGTATCACTGAAATGGAAGAGCAATTTAAACTGAAGAACTGGGAGAA
GGAAAGGCTTGTTGAGGATATGAAAAGGGAGGAAGATTTGTTAAAGCAAGTTAAGGGCTC
ATTTGGCAATCAAAAGCAACAGCTTGTGGACTATATCACTCAATCACCAGCAGCAAAGAG
GGTGCAGGGTTCACCAACCATTCGCTCACCTGCAACTCCGGGAAGTAATCCATTTGCAGC
AACTCCTGGGCGTAACCCGTTCACATCAACTCCTGGAGGTCACCCATTTGCAACAACTCC
GGGAGGTCACCCGATTGCAGCAACTCCTGGAAGTCACCCGATTGCAGCAACTCCGGGAAA
CATTTCATTTGCAGTCAAGCCTCCCCACATGCGCTGACAGCGTAAATGCCTGCATGCAAT
TTCCTTCTGCTGGGAGTTTGTCATGCTCTGGTTTTATCCATACGTAACCAATTGCATTTT
GCGAAGTTCTTGACGCTAGATTCTAGTGCACAGTAGGGATGCAAAAAGTTAGTACATAAC
CACCTACTTTTGTTCATAAGCCGGGGCCCATCTTTAGTCTCTTATTTTGTTACTAGTCCT
TTTGTGCATCTTGTCGAAAGAGAAGAGAAGGTGATAGAAGAGGTCCCACCTAACCAAATT
CAAGAGAAGGTTTGACAGCAACATGGAAATGTCAGTCTGGCTTCAGCATTAGCTTGTTTC
ACTTGTGAACCTTCCAGCTGGAATAAGGCAGGAGCTATTTTGTTTGTCCCCATCATGCTT
GTATGAAACATGATGTAACAAATCAGCTTATTGTCAGCGAGGCCGCAAGCATATACAGTA
TTAATCAGAAAAAAAAAAAAAAAAG

Homology of Contig U35_19899 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g13404.1	419	1e-77	protein\|ATP binding protein, putative, expressed
Brachypodium v1_2	Bradi2g08040.1	417	2e-88
Arabidopsis v10	None