barSeed - Barley Seed Development Database

Probe CUST_16003_PI390587928

Source Contig U35_4108

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16003_PI390587928	Hv_44K_v2	CTGTACCGTTTGTGTTGTTTATGTTACATGCTTTAGCAGTAATTTCATGTGAAGGTATGT	2268	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56093.3	3323	2e-24	3210 - 3269	100	60 / 60	plus	ABC12946 ABC17435
JLOC1	JLOC1_36257.3	3751	8e-25	3368 - 3427	100	60 / 60	plus
Harvest21	ABC12946	2370	3e-25	2269 - 2328	100	60 / 60	plus	ABC12946
Harvest35	U35_4108	2429	3e-25	2269 - 2328	100	60 / 60	plus

Contig Sequence (2429 bp)

>U35_4108 2429 Hv_44K_v2
GCTACACTGTTGATGCCCTGTTGAGGAAGCTACTATGGAAGATTGGATACACCGAACAAC
CATTATCAGCAGGTATTGACAAAATGGATGTGCATGACTTGAAGAAGGAAATACAACAGA
GACTTAAAAACAGAAAATATTTGATTGTGCTGGATGATGTCTGGGAGCAAGATGTATACT
TCCAGATACATGATGCTCTCCAGGATCTCCCAGGCAGTCGGATCATCATTACGACACGGA
AGGATCATGTTGCCGGAATTTCTTCTCCCACCCGTCACCTTGAGCTCGAGCCATTGAGCA
AGTCTGATGCATTTGACCTCTTCTGCAGAAGGGCTTTTTACAACCAGAAGGGGCACATAT
GCCCCAAGGATTTTGAGACGATAGCTACTTCTATAGTTGACAGGTGCCATGGCCTACCTC
TAGCAATTGTTACCATTGGTGGCATGTTGTCTTCAAGACAACGTTTAGACATTTGGACTC
AAAAATACAATCAACTTCGAAGCGAGTTGTCAAACAATGACCATGTCCGAGCAATTTTCA
ATCTGAGCTACCATGACCTTCCAGACGACCTCAAAAACTGTTTTTTGTACTGCAGTCTAT
TCCCTGAAGACTACCAGATGTCACGTGAAAGCCTTGTGCGACTGTGGGTTGCTGAAGGCT
TTGTGGTAAGAAAAGAAAAGAACACACCAGAGATGGTAGCTGAGGGAAATCTCATGGAAT
TGATCCACCGCAATATGCTTGAGGTTGTGGAGAATGATGAGCTTGGTAGGGTCAACACCT
GTAAGATGCATGATATTGTGCGTGAATTAGCTATTATTGTTGCCAAAGAAGAGAGATTTG
CTTCAGCAGATGATTATGCCTCAATGATATTGGTACAGCAGGATAAGGATGTTCGTCGTC
TGTCATCATATGGATGGAAAAATGACAATGTAGTGAAAGTTAAACTTCCGCATCTTCGAA
CAGTACTCTTACTTGAAGCGATTTCACCCTGCTCTGGCATATTGCCGTCTATTTTGTCTG
AATCCAACTACCTTGCTGTTCTTGAGCTGCAAGACTCTGAAGTCACTGAAGTGCCAACAT
CAATAGGGTCTATGTTCAATCTACGTTACATCGGGTTACGGCGCACTAAGGTCAGGTCAC
TTCCGGACTCTATCGAAAATTTGTCTAACCTTCACACTCTGGACATCAAGCAAACCAAAA
TAGAGAAGCTACCACGAGGGGTTGTGAAGATCAAGAAGTTGCGGCACCTTTTAGCTGATA
GATATGCTGATGAGAAGCAGACAGAGTTCCGGTACTTCATTGGAGTACAAGCACCTAAAG
AGCTGTCCAACTTGGAAGAACTGCAAACTCTCGAGACTGTGGAGTCCAGCTCTGATTTGG
CAGAGCAGCTGAAAAAACTGATGCAACTACAAAGTGTGTGGATTGATAACATTAGTGCTG
ATGACTGTGCAAATCTGTTTGCTACCCTGTCAACTATGCCACTTCTTTCAAGCTTGCTTC
TTTCTGCAAGGGATGCGAATGAGGCGCTTTGCTTCGAGTCTCTCAAACCAAGTTCTAGCT
ATCTGCACAGGTTGATTACCAGAGGACAATGGGCCAAGGGAACACTAAATAGCCCGATCT
TTCTCAGCCATGGGAAAAACCTCAAGTATCTAGCTATAAGCTGGTGTCACCTTGGGGAAG
ATCCATTGGGGATGATGGCACCTCACATGCCGAACCTCACATATCTGAGACTAAACAACA
TGCACAGTGTAAAAACTTTGGTTCTGTCTAAAGACTCCTTTCCCAACCTGAAGACGCTTG
TCTTAAGGCACATGCATGATGTTAGTGAGCTAAAAATCATTGATGGCGCTCTTCCCTGCA
TTGATGGTTTGTACATTGTATCGCTGTTGAAGCTCGATAAAGTCCCTCAAGGCATTGAAT
TCCTTCGCTCCCTTAAGAAGCTCTGGCTGCTGAACTTGCACAAGGATTTCAGAACTCAAT
GGGACACTAAAGGAATGCATCAGAAGATACTACATGTTCCAGAGGTTCGTGTCTAGACGC
GGCAAGTCGGTTCTTTCTGCAGTGTATTCTTGTATGCTGCTTCCAGTGCAACTGTATCAT
ACTTTCAACCATTCCAATAAGTTTGCCTCGACATCGCCAACAGCATTTGGTCGGTACTTC
TATGCTGTAACAAATTTATCCCTCAAAGATTGGTTGGTGTCCATTGCCTTCCAGAGGCCT
CTGTACCGTCTTTTTTTGCGGGGGTATGTATTTTTTGTTGACCTTGCTCTGTACCGTTTG
TGTTGTTTATGTTACATGCTTTAGCAGTAATTTCATGTGAAGGTATGTATTGTTTGTACA
GAACATCATCTATGATTAATCCTGTCAAAAACATTTCATTTTATATCTTGGTATCTTTTG
ATCCATGTCACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4108 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g11960.1	824	0.0	protein\|disease resistance protein RPM1, putative, expressed
Brachypodium v1_2	Bradi4g21890.1	909	0.0
Arabidopsis v10	AT3G07040.1	926	2e-92	\| Symbols: RPM1, RPS3 \| NB-ARC domain-containing disease resistance protein \| chr3:2226244-2229024 REVERSE LENGTH=926