barSeed - Barley Seed Development Database

Probe CUST_16001_PI390587928

Source Contig U35_4110

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16001_PI390587928	Hv_44K_v2	TCATTTGCATGTGTTGTAAAAAACCTGGCAGTGTGTCATGCATGTTTTAAACCTATGTGG	1322	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5374.1	1420	2e-24	4 - 63	100	60 / 60	minus	ABC08993
JLOC1	JLOC1_3455.1	1460	8e-25	1376 - 1435	100	60 / 60	plus
Harvest21	ABC08993	1419	3e-25	1323 - 1382	100	60 / 60	plus	ABC08993
Harvest35	U35_4110	1419	3e-25	1323 - 1382	100	60 / 60	plus

Contig Sequence (1419 bp)

>U35_4110 1419 Hv_44K_v2
TGCCCCTAATATTGGTTCCGCCCCAACACCCATTTCCTAAAGAGCCTCCGCCATGGCAGT
CCACCTTCAAGCTCAAGAACAACAACAACACCACCTGAATCTACCACAAGGGTTCAGGTT
TCACCCAACGGACATGGAAATCATCACTTTCTACCTAGTCCCCAAGGTGCTGAAGAAACC
CTTCGACACGATGGTAATCGAGGAGGTGGATCTGAACAAATGTGAGCCATGGGATCTCCC
AAATCAGGTAAACATGGGGGATATGGCACAATACTTCTTCTCCCGGAAGGACCTCAAGTA
CCCCACCGGAGTACGGACCAACCGGGCCACAAATGCTGGCTATTGGAAGGCTACCGGAAA
GGACAAGGAGATTTTCCACCCGCCGACCAGGAGTCTCATCGGCATGAAGAAGACTCTAGT
CTTCTACAAGGGCAGAGCCCCTAGGGGGGAGAAGACCAACTGGATCATGCATGAGTACAG
ACTTGAGACCGGCAAGAAGCCCACTCCAGGCTTGCCCACTGACATTGCCAGAGCTACCAC
CATTAATGCGTCCTCCAAGGAGGAGTATGTGGTTTGTAGAATCTTCCATAAGAGCACTGG
ATTGAAGAAGGTGCGGATGCCATCATATGTCATGTCCATGGGGGCAGAGCAACAACACGA
CTTCTTCGAATCCAATACATTTGCTCCTCTCATGAACTACAGCACATCATCGTCATCGCC
ATTGCCACCGTTGTCTGAAGGTTCTTTGTACCAGATGCATAACATTGGGGTCGGATCTTC
TATGATGGGCAGTGATGTGCTCCCAATGATGAACAACCATTACTTTGAGAACCATCACCA
CCAGATGCTGGTTGCCCCGCCACAGTCATCGATTTCGTTCTACAACAACAACCAGCAGCA
ACAGATGATGCATATCAGTGCAGACCAGGGCTTCATCGTCGGGGTTGATGCTGGGAGCGG
TACATCATCTATAGTATCACAGGAGGATGTTGTGACCGGGGTGAACAACAACATTCAGGG
AAATGGTGGTGCAACAACCTCCAGCGAGATCTCGTCAGTCAACATGGGCATGGATGACAT
GTGGAACTACTGATGCACAAAGGATCTGAGAGAATACATAAATGTGTGCATGCATAAAGT
AATCATCCACCACAAGATCAGTTGACATATAGCAACGTCTATATTGGTTTGCGTCTCATT
TTATTTTCATGGTCAAAAGTGTGTTTGTATGCATTGGCTTGCTTGGCTTGCTTTTCTTCT
TCTATTATTTTCTTTTTGTGTATTGGCTTGTATATGCACCACCCACTGGTGTATACCTAG
CTTCATTTGCATGTGTTGTAAAAAACCTGGCAGTGTGTCATGCATGTTTTAAACCTATGT
GGAATAAATATTTTGTTTAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4110 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g29840.1	334	1e-64	protein\|no apical meristem protein, putative, expressed
Brachypodium v1_2	Bradi4g34157.1	355	6e-64
Arabidopsis v10	AT3G18400.1	314	3e-62	\| Symbols: anac058, NAC058 \| NAC domain containing protein 58 \| chr3:6318745-6320593 REVERSE LENGTH=314