barSeed - Barley Seed Development Database

Probe CUST_16000_PI390587928

Source Contig U35_4111

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16000_PI390587928	Hv_44K_v2	CAAGGCGATCCTCCTACCGGCGACCACAACTCTCATCGGCATGAAGAAGACACTGGTCTT	373	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.542	0.444	0.901	1.864	1.312	1.583
Raw	9.887	12.161	23.276	69.172	19.218	25.132

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57427.1	1475	2e-24	396 - 455	100	60 / 60	plus	ABC08993 ABC11340 ABC17688
JLOC1	JLOC1_37220.1	1444	8e-25	402 - 461	100	60 / 60	plus
Harvest21	ABC08994	491	3e-25	374 - 433	100	60 / 60	plus
Harvest35	U35_4111	493	3e-25	374 - 433	100	60 / 60	plus

Contig Sequence (493 bp)

>U35_4111 493 Hv_44K_v2
CACATCTATATCATTTCCACCAACATTTGTTCCACCCCAACACCCATTTCTGAAAATCCT
CCACCATGGCAAGCCACCTTCAAGTTCAGCAACAGAAACAACAACTGAATCTGCCGCCGG
GGTTCAGGTTTCACCCAACGGACATGGAGATCATCATCTTCTACCTGGTCCCCAAAGTGC
TGAAGAAAGCCTTCGACAAGACAGTGGTGGGGGAGGTGGATTTAAAAAAATATGAGCCAT
GGAATCTCCCAAATGAGGTAAACATGGGGGAGAAGGATCGATACTTCTTCTCCCAGAAGG
ACCTCAAGTACCCCACAGGGATACGGACCAATCGGGCCACGAATGCTGGCTATTGGAAGG
CTACCGGAAAGGACAAGGCGATCCTCCTACCGGCGACCACAACTCTCATCGGCATGAAGA
AGACACTGGTCTTCTACAAGGGCAGGGCACCTTAGGGGGAGAAGACAAACTGGATCATGC
ACGAGTACAGAAT

Homology of Contig U35_4111 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32260.2	353	3e-58	protein\|no apical meristem protein, putative, expressed
Brachypodium v1_2	Bradi1g63630.1	359	5e-57
Arabidopsis v10	AT5G39610.1	285	8e-58	\| Symbols: ATNAC2, ORE1, ANAC092, ATNAC6, NAC2, NAC6 \| NAC domain containing protein 6 \| chr5:15858591-15859650 REVERSE LENGTH=285