barSeed - Barley Seed Development Database

Probe CUST_15997_PI390587928

Source Contig U35_4114

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15997_PI390587928	Hv_44K_v2	GAGTCGACCAGGAGAAGTTTGCTGTTGAATTATCCAAAAGATATTGTAGTTACTCTTCTT	1295	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59596.1	1982	2e-24	102 - 161	100	60 / 60	minus	ABC12724
JLOC1	JLOC1_38797.1	2611	8e-25	1812 - 1871	100	60 / 60	plus
Harvest21	ABC12724	1385	3e-25	1247 - 1306	100	60 / 60	plus	ABC12724
Harvest35	U35_4114	1539	3e-25	1296 - 1355	100	60 / 60	plus

Contig Sequence (1539 bp)

>U35_4114 1539 Hv_44K_v2
TGGCGGTGGCGCACGACTTCTTCCGCCTCTCGCCGGAGGAGAAGGCCAAGCTCTACTCCG
ACGACCCGGCCAAGAAGATGCGGCTATCCACCAGCTTCAACGTGCGCAAGGAGACCGTCC
ACAACTGGCGCGACTACCTGCGGCTGCACTGCCACCCGCTCGACCAGTTCGTGCCGGAGT
GGCCGGCCAATCCACCGCCCTTCAGGGATGTCATGAGCACATACTGCAAAGAGGTCCGGG
ATCTTGGGTTCCGGCTCTACGCGGCGATCTCGGAGAGCCTAGGGCTGGAGCAGGACTATA
TCAAGAAGGTCCTCGGTGAGCAGGAGCAGCACATGGCGGTGAACTTCTACCCCAAGTGCC
CCTCGCCGGAGCTGACATATGGGCTCCCGGCCCACACGGACCCCAACGCCCTCACCATCT
TGATGATGGACGAGCAGGTCGCCGGGCTACAGGTGCTCAAGGAAGGCCGGTGGATCGCCG
TCAACCCGCGGCCCAACGCTCTCGTCATCAATCTTGGGGACCAGCTGCAGGCGCTGAGCA
ACGGGAGATATAGGAGTGTGTGGCACCGCGCTGTTGTGAACTCAGACAGGCCAAGGATGT
CCATTGCCTCGTTCCTCTGCCCCTGCAATAGCGTCATGCTCGGCCCCGCTGAGAAGCTCA
TCGGGGCCGAGACACCGGCCGTCTACAGAAATTACACCTACGATGAGTACTACAAGAAGT
TCTGGAGTAGGAATTTGGACCAGGAGCACTGCCTGGAGCTCTTCAGAACCTAGGTTTTTT
TTTTCTTGGATAAAATGAGCGTGCTACCTCCATTTTCTTTGCCACAAAAACGAAAGACAC
ATAAGCCACTCGTCAGGTTCAGTCTCTCAAAAAAACAAAAACTTATCAGGTTCAGCCTTC
AGCCCCTAGGCACAACGGCCGTGCCAAAACCCTTCAGAATCTAGTTAGACAAGGGGGAGA
AACCATGACTTGTTTTTGCCATTTGCGTTTTCCGTAATTGACCTGTTTTGTTGGTCGTTT
GGAGTTCCTGTTACCATCCCAATCGGCCACTGCGTGTAGGAGCTCTGCATGTTATCGTCC
CTGTTTTGTTGGTCGTTTGGAGTTTGCTCTAACTGGCCGATTGTACCTCTGGCTGTGTGT
GTTACGTACGATGCAAATCTGCAATGCTCAGGATATCTATGATCCTCCTTAGTTCAACAA
AATGAACTAAATTATCATCATCTTTCATAATTTAGTTCATTTGGTTGAAAAAAAGGATCA
CGAGGTGCTTGCATCTCGGCGTGGGCATCATGATGGAGTCGACCAGGAGAAGTTTGCTGT
TGAATTATCCAAAAGATATTGTAGTTACTCTTCTTTTTGAGAATGATTTATATCTACTAG
TTGTAAGAATTGAAAGGAAATAAAGGATTTTATAAGTGGAAAAAAAAAAAAAAAAATTTC
TCTTCTTTATTTATAGTTCAATACCTGGTTTTATTTCCCAAAAACATTTTTTAAAAAGTG
GAGTTGTTTCTCTGCTTTATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4114 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g03034.4	287	2e-168	protein\|flavonol synthase/flavanone 3-hydroxylase, putative, expressed
Brachypodium v1_2	Bradi1g77040.1	337	1e-176
Arabidopsis v10	AT5G24530.1	341	7e-127	\| Symbols: DMR6 \| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr5:8378964-8383154 FORWARD LENGTH=341