barSeed - Barley Seed Development Database

Probe CUST_15995_PI390587928

Source Contig U35_4116

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15995_PI390587928	Hv_44K_v2	TCAAAGGAGCACCTGAGACCATATTTGCCCGAATCTTATAAAGTAGTGATCTAAAAGATG	1984	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.571	1.305	1.066	1.113	0.485	0.384
Raw	2015.837	2612.387	1894.993	3103.661	478.126	409.968

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13546.1	2088	2e-24	1988 - 2047	100	60 / 60	plus	ABC09522
JLOC1	JLOC1_9182.3	1987	8e-25	1780 - 1839	100	60 / 60	plus
JLOC1	JLOC1_9182.2	2120	8e-25	1913 - 1972	100	60 / 60	plus
JLOC1	JLOC1_9182.1	2017	8e-25	1810 - 1869	100	60 / 60	plus
Harvest21	ABC09522	2069	3e-25	1985 - 2044	100	60 / 60	plus	ABC09522
Harvest35	U35_4116	2069	3e-25	1985 - 2044	100	60 / 60	plus

Contig Sequence (2069 bp)

>U35_4116 2069 Hv_44K_v2
CTGGGGGGCCCACATCGCCGCCGCTGCCGCCCCCACCGCCGCCGGCGACCTCGCCGTCTC
CCCCACCGCCGCCGCGCTCCGCCCTCTCCCCCTCTCTCCCTCCCTCCCTTCACCTTCTGC
CCCTGCCCCAGGTCGGGCCGCGGATCGAGCTTCCCTCCCCGTCCCAGGTCGGGGGGGCCG
CAGATCGAGCAGGTCTGCCCCGATCCGCGCCGTAGACAAGGGCTTGGAGCAGGGCAGCGC
CGGGAGGGGAGCATCTGCGCGCCGCCGCCGCCGGGAGAGGAGCTCGTCGAGCCAAGGTGC
GCAAGAGACATCCGTGTGGTGTTGAACGGGGACTCTTCTTCCACTCCGACGCCTCCCTCC
GGTGGCACAGGAGATATCGAGGAGCACAGCAGTAAAACGAGCAAATTCTGCCTTTCTTCT
TATGGAGGATCGTGTTGGTGTCAAGTATGAGAGTGTCAATGAGAGCAAAGAGCGTAAGGG
AGGGCATGGCATCCCAAAGGTTTCCATGGTTCCGCTCGTCTTCCTCATATTCTATGAAGT
CTCAGGGGGGCCCTTTGGGATTGAGGATAGTGTCAAGGCTGCTGGACCGCTCCTAGCAAT
TGTGGGTTTTCTTCTGTTTGCGGTCATATGGAGTATTCCAGAAGCCCTAATCACTGCTGA
GATGGGCACTATGTTTCCTGAGAATGGTGGCTATGTCGTCTGGGTCTCTTCAGCTCTTGG
GCCCTTTTGGGGTTTTCAGCAAGGCTGGGCGAAGTGGCTCAGTGGTGTCATAGACAATGC
TCTCTACCCAGTCCTTTTTCTTGACTATGTCAAGTCCAGTGTTCCAGCTCTCGGGGGTGG
GCTTCCAAGGACTTTTGCGGTGCTTATCCTCACAGTTGCCCTTACTTACATGAACTACAG
AGGATTAACGATAGTTGGCTGGGTGGCAGTCTTTCTTGGGGTATTCTCTCTGCTCCCTTT
CTTTGTAATGGGATTGATAGCAATTCCACATATTGAGCCTTCAAGATGGTTTGAAATGGA
CCTGGACAATGTGAATTGGGGCCTGTATCTAAACACTCTGTTTTGGAACCTCAACTACTG
GGATTCAATCAGTACATTGGCTGGAGAGGTTGAGAATCCAAAGAGAACCCTCCCCAGGGC
ACTTTCTTATGCTCTTGTTTTAGTAGTCGGGGGATACCTCTACCCTCTGATCACCTGTAC
AGCGGCGGTTCCGGTTGTTCGGGAGTCATGGACAGACGGGTATTTTTCAGACATTGCAAA
AATCCTTGGTGGTTTCTGGTTGCACTCGTGGATTCAAGCGGCGGCCGCATTGTCTAACAT
GGGCAATTTTGTTACTGAAATGAGCAGCGATTCTTACCAGCTTCTCGGGATGGCTGAGCG
TGGCATGCTCCCCGAGTTCTTTGCCAAGAGATCACGCTACGGGACCCCGCTGATTGGCAT
CCTGTTCTCGGCGTTCGGCGTGGTCCTGCTGTCCTGGATGAGCTTCCAGGAGATCATTGC
CGCGGAGAACTACCTCTACTGCTTTGGGATGATACTGGAGTTCATCGCCTTCATCAAGCT
GAGGATGACCCACCCAAGCACCTCCCGGCCTTTCCGGATCCCGCTGGGCACCGTTGGCTC
CGTCCTGATGATCATCCCTCCGACCATCCTGATCGTCGTGGTGATGGTGCTGGCTTCCTT
CAAGGTGATGGCCGTGAGTGTCCTGGCGGTGCTTGTTGGCTTTGCGCTGCAGCCGGCCCT
GGTGTACATGGAGAAGAAGCGGTGGCTGAGATTCTCCGTCAGCGAGGACCTGCCCGATCT
GCTGGAGTCCTCGGCGGCACCGCCAGCCGAAGATGACACCACCCCTCTCGTTGTCTGATT
TATGATGCAAAGTGTAATAAAAAGGATAGGAACATGATGCCCTGTATAATGCCTTGTGGC
ATCCATATTTGCTGTTGTATACCAACGTGTTGTCATGCAAAGGGAATAGCGCATTTTAGA
AACATCAAAGGAGCACCTGAGACCATATTTGCCCGAATCTTATAAAGTAGTGATCTAAAA
GATGTTATATTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_4116 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g37984.2	493	protein\|amino acid permease family protein, putative, expressed
Brachypodium v1_2	Bradi3g16160.1	496
Arabidopsis v10	AT1G31830.1	495	Amino acid permease family protein \| chr1:11418875-11420362 REVERSE LENGTH=495