barSeed - Barley Seed Development Database

Probe CUST_15984_PI390587928

Source Contig U35_4729

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15984_PI390587928	Hv_44K_v2	CTTCATTGGTTCTGTAGAATTCCAGATTGGACATAGGCTGTATTTTCAAAGCATTGCTTC	353	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.504	0.513	1.264	1.195	0.982	1.183
Raw	32.484	46.592	107.991	149.048	46.960	62.476

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55907.4	1868	2e-24	356 - 415	100	60 / 60	plus	ABC38422
MLOC	MLOC_55907.1	1931	2e-24	430 - 489	100	60 / 60	plus	ABC38422
MLOC	MLOC_55907.2	1642	2e-24	428 - 487	100	60 / 60	plus	None
MLOC	MLOC_55907.3	1904	2e-24	411 - 470	100	60 / 60	plus	ABC38422
JLOC1	JLOC1_36102.1	2015	8e-25	430 - 489	100	60 / 60	plus
Harvest21	ABC10997	754	3e-25	354 - 413	100	60 / 60	plus
Harvest35	U35_4729	754	3e-25	354 - 413	100	60 / 60	plus

Contig Sequence (754 bp)

>U35_4729 754 Hv_44K_v2
GCGGCAGGACCGGCCGCAACTGCAGGGAAGCAACAGCCAGACGCCGGCGGCATGGCTCGG
AGCGGCAGCGGCAGCGGCGCCAGCCCGTGCGGCCTGGACAGGGAGTTCGCCCCCCAGATC
GCCCAGCTCCTCGCCGCCCCTTCTCTCCAGTCCGCCCAGGAATACTATGAGGAGCTCATA
AAGTCTAAGAAACATGACGGCGTAAGAGTCAACTACAAAGGCGATCATGGGAAAGGTGTT
TGTGCAAACAAGGATTTTGCTGAAGGAGACCTTATTCTGAAGGATCAAATATTGGTTGGT
GCGCAACACAGCCTTAACAAGATTGACTGTGTCGTGTGTAGTTATTGCTTCCGCTTCATT
GGTTCTGTAGAATTCCAGATTGGACATAGGCTGTATTTTCAAAGCATTGCTTCAAGCATT
GGCTGCAGCAGTGAGAGGCACTGTCATGAAAGTGATGTGGGATCAAGCACTTGCTCTTCT
GGTGTAACAAAGGAAAAGAGCAACACTTTGCCACAAGAGGTCATAGAATCACTTATAACT
GGCGATGTGTCACTGCCTTTCTCAGACCACTTCTCTTTACCAGAAATTTTTGCTTGTCAA
GGATGCGAGGAAGAACGCTACTGCAGCCAATCATGTGCAGATTCTGACTGGGAATCCTAC
CATTCTTTGCTCTGTTCTGGCCCTAACACTGAACCACCCCGAAGATCTGCTCTTCACAAA
TTTATAGAGCATGCTAATGAAACCAATGATATTT

Homology of Contig U35_4729 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53700.1	518	8e-115	protein\|zinc finger protein, putative, expressed
Brachypodium v1_2	Bradi5g22730.1	474	1e-119
Arabidopsis v10	AT3G21820.1	473	1e-62	\| Symbols: ATXR2, SDG36 \| histone-lysine N-methyltransferase ATXR2 \| chr3:7688629-7691444 REVERSE LENGTH=473