barSeed - Barley Seed Development Database

Probe CUST_15978_PI390587928

Source Contig U35_4735

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15978_PI390587928	Hv_44K_v2	CCTGTGTGCGGGGTAATTGTGCGTTTTAATTTAAACATTCTGAAGACTTTTCTAGAATTA	1071	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374886	4065	2e-24	3919 - 3978	100	60 / 60	plus	ABC11977
JLOC1	JLOC1_6925.1	1300	4e-23	1149 - 1208	98	59 / 60	plus
Harvest21	ABC11977	1176	3e-25	1072 - 1131	100	60 / 60	plus	ABC11977
Harvest35	U35_4735	1176	3e-25	1072 - 1131	100	60 / 60	plus

Contig Sequence (1176 bp)

>U35_4735 1176 Hv_44K_v2
GAGAAAGAGTATCTGGCGCAAAGAAAAGAAAACTAGGGCGAGAGAGTAATAAACTAGAGA
AAAGACGAGTGAAAAGGAAAGCGCGTGTACCAAACACCAACGGCTCGCAAAGGAGGAGAA
TCTGCTCCCATTACTGAGCTGTGCGCACGCCCTGACGGCGCCGCACTAGACTAGAGTAGG
TGCTGCTGCGGAACCAGGAGGGGAGAGCGAGTGGAGGAGAGGAGGGTGCGGGAGAGAGAT
GGGGTCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGACGTCCTCGCCGGGCCACT
GGTTTCGCTTGCTTATCCTCTATATGCCTCTGTGAGAGCAATTGAAACAAAATCTCAAGT
AGATGATCAGCAATGGCTTACTTACTGGGTGCTGTACTCGTTTATCACTTTGTTTGAGCT
CACTTTTGCTCCGATACTTGAATGGCTTCCATTCTGGCCCTATGGAAAACTGTTCTTCAA
CTGCTGGCTAGTCTTTCCTTGCTTCAATGGTGCTGCTTATGTTTACGAGCATTTCGCGCG
GCCAATGTTTGTGAATCGCCAAATAGTCAACATCTGGTACGTCCCAAGGAAGGATAAGTT
GAGTAAACCTGATGATGTACTCTCAGCCGCAGAGAAATATATTGAACTAAATGGACCAGA
AGCATTTGAGAAGCTAATCAGCAAGTCTACAAGTACAAAGCCTTCAAAGTTTAGGAGCAC
GAGGCGGTCGATCTTGCAGGGGGCGGAAGCTGAAAAGATGGGCAAGGCTGAGAGAGATTC
ATGGGGTGAAAATCCATTCTATGATAAAAACTACCGACACTAAATCAGCCATCTTAGATT
CTGCTTGATGAAGAGCTTTCCACGCACGATGCTTGAGGACTGCATGACGCATCTACCAAA
TCGTCATTGGTACCAGAACAACTATGCGACGGTTGAATTCTTGTAAATAGGTGCCAGCGT
TGACATGTTCCCAGATGATGTAATGTTGTCTTGCATATTAGTAACAGATTTGGCTAGGCC
AACTTATCATGTGCCTTTACTAGACGTCGCCTGCTTCGAACATAGCGATTTCCTGTGTGC
GGGGTAATTGTGCGTTTTAATTTAAACATTCTGAAGACTTTTCTAGAATTAAGAACTTCA
AATGGACGTTTATGATGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4735 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g12220.1	194	4e-117	protein\|HVA22, putative, expressed
Brachypodium v1_2	Bradi1g45240.1	193	8e-123
Arabidopsis v10	AT1G74520.1	177	6e-74	\| Symbols: ATHVA22A, HVA22A \| HVA22 homologue A \| chr1:28008109-28009156 REVERSE LENGTH=177