barSeed - Barley Seed Development Database

Probe CUST_1596_PI390587928

Source Contig U35_30203

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1596_PI390587928	Hv_44K_v2	AGGTTAGGTCTTGATGCGCTACGATTCTGCTGTGTATGTATGTCTTCTTTTGGTGTAAAA	354	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38537.1	1952	2e-24	1602 - 1661	100	60 / 60	plus	ABC12414
JLOC1	JLOC1_25065.1	2340	8e-25	1649 - 1708	100	60 / 60	plus
Harvest21	ABC12413	655	3e-25	516 - 575	100	60 / 60	plus
Harvest35	U35_30203	494	3e-25	355 - 414	100	60 / 60	plus

Contig Sequence (494 bp)

>U35_30203 494 Hv_44K_v2
CAGAGAGTAGTACAGAGGGAGGAACACAAGAAGCTGAAATGATGCAGGAAGATAACACCC
GCTATGAGAATAAGCTGATCGCGCCTGAGAGTATCAGTGAAGATAACAACATAATTGGGA
CAAATGGCTTCGTAGATGAGAATATCGCCATCATTCCTGAGAGAACCAGTGTCTCGGAAG
GTAGAGAGCAGCTGCTGGACTGTATCTCCAGCATGTCGAAAAGCGCCGAGGGGCTTCGGC
TCGGGTTGGATTCCTTGTCAAAACGAGTCGGGGACTTCTTCCAGATCGTGCTTACAGGAC
GTGACGCATTGCTCTGCAATCTAAGGATGTCCGATGCAGCAAGCAAGGTCACCGAGGTTA
GGTCTTGATGCGCTACGATTCTGCTGTGTATGTATGTCTTCTTTTGGTGTAAAANATGTG
TATATACGGGTTGGCAGCACATACTCGTACACCGGTCTTTTGACCTGTGGCCCCTGCTCA
ACCTCACCGGAACT

Homology of Contig U35_30203 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None