barSeed - Barley Seed Development Database

Probe CUST_15969_PI390587928

Source Contig U35_4746

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15969_PI390587928	Hv_44K_v2	CGCCTTCCAGTTTTGCACATGTGATGATAATAGTTGATAATAATGTACCATCTTCATTTC	1521	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.436	1.354	1.166	0.790	0.345	0.286
Raw	103.942	150.236	115.816	122.803	18.857	17.395

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61166.4	4133	7e-23	4017 - 4076	98	59 / 60	plus	ABC15200 ABC29988
Harvest21	ABC29988	367	1e-23	290 - 349	98	59 / 60	plus	ABC29988
Harvest35	U35_4746	1599	3e-25	1522 - 1581	100	60 / 60	plus

Contig Sequence (1599 bp)

>U35_4746 1599 Hv_44K_v2
CTCAAGCCCAGACGAATCAAATGAGGCCACCTAGTCATGGTTTTCCTGAAAATGTCCGGC
CTACAGTGCAGCAACAGCTATATGGTGTATATCAATCTGAAATGGCACCAAGGACGCTTG
CACCAAACATTCCGCGGGCTGTACCCACCAGACCTGATGATGGCATGATTCGACCGCCCA
TGGCTGGACCCTTGCCTGGACATCATGACACAACTATGCCTCCTTTTGCTTCAGAAAATG
TTGGCCGGCCACATCCTGTTGGAATGAGAAATGGTGTTGGCGGGGAGCAACTTGCAAATT
CCAGGGCTTTCCACGATGAAGGGTTCAATTCTTCACGGGAACATTTCAGGTCGTTGGGGC
CACCATATCTTGGCAGATACAATGTCAACCCTAAAGATATTGAAGAGAATATTAAGCAAT
TTCCAGGGCCAACTCATCTTGATGACGACAGTTTTCAGAGAGGCCCAAGGCCTTTTGATG
GTTTTGATTCATTTTCTGGAAGACCTCCATTCCAAAACAAGCCAGGCCCATATCCTATAG
GCTTCCCTGAAGATTTATCAAGGAAGCCCCATTCAATTGTTGGTCATCCTGACTTTGTGT
CACCTGGTCCAGAATTTGGCCATCACAGGGTTGATGGAATGCCTAGAAACCCAGGTTCAT
TTGTTCAAGGGATGACAGCTGGTCCTGGAGGTCTTCATAAGGACCAACTAGGCCCTGGCA
ACCTTCCAGGGAGTAGACAGCATGATTTTGACAATCTAGCGTTCCCTCATACACATTTCC
ACCCTGCTGATATTTTTCTTCCAAGAAATCTTCATGGTTCTGAACCCCTTGGGCATGGTC
AATTGCATGGAATTGAACCTTCTGGCCACCGGTTCCAAGGACACATACATCCAGATGATA
CAAATTTTGATGACTATTCTCGACATGGTTTTCCACAAGAATCTGGCCGCTTCAGTTCGG
GTGGTTTCTTCAGTAGTGGAGATGTTGGTTGGTGCAGGATATGCACGTTTAACTGTGGGA
GTGCAGAGGACCTGGGTCTACATGTGCATACAAGAGAACATCAACAGCATGCAATGGACA
TTGTTCTGAAAATGAAGCATGATGCTGCGAAGCGACAGAAAATGAATCCTACAGGCCCCA
AGTCATTAAACAAAAAGGTAGCCATGAAGGGCAACTTCTATGGAAATAGGCGTTAGAGCT
CCTGTTACATAGTTCAGCATTCGATGAGATTTCAAGGTAGGTAGGGTGGTTGCATTTCCC
CCCTCAAGTGCAACCCTAAGTTCAGTAGTTCAGTTAGTTGCTTTGCCCCCGTCCTTCGCC
AGGTTGCTGCTAGTGCTGTTTGGATCTATTTGCGACCACTCAACTGTTCTGCATGTTTGG
AATGGAATATTTAGTTGTCCCAAACTTCTGTTATTATATTGTGCTGCAGACTATCCATGC
TTTTATGGTACTTTTTGTTGCGATTTTGGATACTCGATTCCTGTATTCTGACTCTAAGGA
TGCTTCTATTTCTGGGCGTGCCGCCTTCCAGTTTTGCACATGTGATGATAATAGTTGATA
ATAATGTACCATCTTCATTTCAAAAAAAAAAAAAAAGGG

Homology of Contig U35_4746 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g05920.1	424	4e-155	protein\|ZOS12-01 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi4g42217.1	1162	0.0
Arabidopsis v10	None