barSeed - Barley Seed Development Database

Probe CUST_15966_PI390587928

Source Contig U35_4749

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15966_PI390587928	Hv_44K_v2	CACGTGGAAAACTTTGTTGTATGGGAGAATTATAACTGAAATAATGACATGTGTCAGCAA	727	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13301.1	959	3e-21	903 - 959	98	56 / 57	plus	ABC08416 ABC10448
JLOC1	JLOC1_8986.1	1076	4e-23	889 - 948	98	59 / 60	plus
Harvest21	ABC10448	811	3e-25	728 - 787	100	60 / 60	plus	ABC10448
Harvest35	U35_4749	811	3e-25	728 - 787	100	60 / 60	plus

Contig Sequence (811 bp)

>U35_4749 811 Hv_44K_v2
CTCTTCACTCGTACTGTTATAGTATTATTCCCTCCAATCCGTTCCGTTCCACCGGTACGC
TACGCAGCCTCCCGGGCTGTCCGTACTGCGCCGCCGCCGGCTGGTCTGGTCCTCAGCTCG
CATCTCGGGGACATGTCGAAGAAAATTGTGGTGAAGCTGGAGCTGAACAGCGGCAAGGAT
AAGCAGAAGGCCATGAAGGCCGTGTCGGCGCTCGTCGGCATAGACTCGCTGTCGGTGGAC
ATGGCCACCCGCAAGATGACGGTGATCGGCATGGTGGACCCGGTGGACGTGGTGAGCAAG
CTGCGCAAGGCGTGGTCGGCGTCCATCGACTCAGTCGGCCCGGCCAAGGAGCCCGAGAAG
AAGGACGGGGACGGCAAGAAAGACGGCGCCGACGCCAAGAAGGAAGGCGAGGGGGAGAAG
AAGGACGGCGACGGCAAGGACGGGGCCAAGAAGGAGGACGGCGAGGCGAAGCCGCCACAG
CCGACGGAGCAGCAGCTCGCCGAGCTCATGAACCAGTATAGGTCGGCTTATTCGGCTTAC
CACAACCCCTACATGAACAACCACTACGTCGTGCAGAGCATGGAGGAGAACCCCAACTCC
TGCGCCATCTGCTGAGAAATGCACGGCGTAGTTATGCAGAGTACGTATGGAACAAAGACG
CTGCCTGCTCTCTTTTGACGTGTATGCCGTCTCTGTACAGAATGCAGTTATGAGGAAGGA
GGACATTCACGTGGAAAACTTTGTTGTATGGGAGAATTATAACTGAAATAATGACATGTG
TCAGCAATTTTTTTTTTCTTTCAAATATGTA

Homology of Contig U35_4749 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None