barSeed - Barley Seed Development Database

Probe CUST_15965_PI390587928

Source Contig U35_4750

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15965_PI390587928	Hv_44K_v2	CGTAACAGGCATTGTTAACCACTCAACTTTGCAAAACAAATGGACATTTCAAATCTCAAA	2049	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61973.2	1856	2e-23	1566 - 1623	100	58 / 58	plus	ABC10540
JLOC1	JLOC1_40534.2	1876	1e-23	1632 - 1689	100	58 / 58	plus
JLOC1	JLOC1_40534.1	1907	1e-23	1663 - 1720	100	58 / 58	plus
Harvest21	ABC10540	2123	3e-25	2050 - 2109	100	60 / 60	plus	ABC10540
Harvest35	U35_4750	2123	3e-25	2050 - 2109	100	60 / 60	plus

Contig Sequence (2123 bp)

>U35_4750 2123 Hv_44K_v2
GCGGCCATGGTTGATGAGCCCCTCGACCCGCCGCCGGCGACGCCGCCGCCGCCGGCCGCC
CCCGCGCCGCTCCTGCGCCCGCGGCGCGAGGCGTTCGAGCACGGCCTCCTGCCCATCCCC
AAGCTCATCTTCCCGGAGGGCACGCTGGCGCAGACCCTCTCCCAGCTCAAGGAGAAGCTC
GTGCCCGCGGCTGCCGCCGCGGGAGACGGGCGCGTGGGCGCCGCGGCGCTCGCGGAGGCG
TTGCAGATCCCGCCCGACCAGGCGGCGCTCGCGATCGGCATGCTCGCGGCGGTCCTCCCC
GGGGACGACCCCGCGCTAGACGCCGGTGGGGGTGGAAGCGCCGACCTCCGCGATGTTCTG
CTCTTCCTCTACATCCAGTCGTACAAGCGCCTCGTACCGCGCCCACACAAGGACTCGCCC
GCCGTTGCCGACGTCTGGCCATCCACCTCAGCGTTCGACGGCTACCTGTCCGTTCTCTCT
CCGATCCAGCTTGTACGCAGTAATAGCCGTCGCTTTATACCTTCTCAAGCAGATGAAGAA
ATTCACCAGTTATCTTATCTGCAAAAGCATATGGCTAATATTCTCACTCTGTTGGCTGAT
TCTGTCGAGGGGGAGGGGGATGATTCTCTGGTACTAACAATGGAGACTTTTGAGCACCTT
GGATTCCTAGTGCATTTTTCGGAAGGAACATCCCTAAGCCAGGCATCCACGTTTTTTGCA
AATTCTGATCCGGACATGCCGGCTGCTCCAGTATCTGCTGCTCAGGTCCATGATTGGATT
TTGCAGAATATTGTTTCTTCATTGGAGTTTTATACTGAGAAATCTACAGCAAAGGAAGGG
AGCCAGCAGATAGCGTCTGATCTTGATGTTACCATGGCAGATGCCAATACAAGTCATCCA
AGGAACAGCACACCTACTGCTGCCAATCCCGCATTCCATAGAAATTCTACATTTGTGGAG
GGTTTCTCCAAAACTTCTGTTGTCAAGCATGCATCTGATGTCAAAGGAAATTCAGTGAAG
GTTTTGAACTGCCATGATTCCGTTATTTATATATTAGCGCCGGTGAAGTATGCTACCGTG
TATGGATGTTCTGATACTACCGTTGTCCTTGGTGCTGTCGGCAAGGTTGTAAAGGTGGAG
CATTGTGAAAGAGTGCATATTATTGCAGCTGCAAAACGAATCTGTATTGCCAACTGTCGT
GAGTGCATCTTCTACCTGGGAGTAAATCACCAGCCTCTTATTGTGGGGGACAACCATAAA
TTACATATTGCTCCATTTAATACTTTCTATCCAAGATTGGGTGAGCACATGACACAAGTT
GGTGTGGATCCCTCTACAAATAAGTGGGACCAACCGTTTGTATTGGGAGTTGTTGATCCA
CATGATTCGTTGTCCCATCCTGCTGGGGTTTCTGATGTTCAAGCCGAATCTGCTGCTTGT
GTAGATCCTGATCTATTCACAAACTTTTTGATTCCTAATTGGTTTGAGGATGAAGTACAA
GAGCCTACAAAGTGCAATCCTTTTCCATTGCCTGAAATTTATCAGGCATCGCAAAACAAG
AAGCAAGCTGTTCTGGAAGATACTAAAAAAATTATTCGGGAGCTGCAACTTGACGAAAAT
AGGAACAAGGAATTAGCAAGTGCCCTTCACTCGCAGTTCAAAGATTGGCTATACGCTACA
GGCAACATCCGCCAGCTCTACTGTCTGCAAGGTGACTAACCATGCCGTGGGCTGCTTTCG
TCAACAGAGGTGTGCATCCACAAGACTGTTTTCCATCCTTTGCTGACTAGCTGGTGGGAC
TCCTGAAACATTCGACAGCATGTAGTCGAAGCTGACCTTACTCTAAGGAGTGGTTTCCGC
CCTGTCTTCAGCCCTGTAGAACCCTGAAAGAAAAATGTAAAAAGGAACAGGTGGTTTTGC
CTTTTTTTTCTTTCCTTTTTGCCTTTTGCAAAGTAGCTTCATATGTTTCCCCCCAATATC
ATTAGGTTGTTAGGATATTTGGTCTCGGTTTCCACAGTTTTTTTGGGCTCTCCAGAAGTT
CCACGAATACGTAACAGGCATTGTTAACCACTCAACTTTGCAAAACAAATGGACATTTCA
AATCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4750 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g10130.1	580	protein\|tubulin binding cofactor C, putative, expressed
Brachypodium v1_2	Bradi3g07020.1	569
Arabidopsis v10	AT2G42230.2	568	C-CAP/cofactor C-like domain-containing protein \| chr2:17593705-17596563 REVERSE LENGTH=568