barSeed - Barley Seed Development Database

Probe CUST_15961_PI390587928

Source Contig U35_4754

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15961_PI390587928	Hv_44K_v2	CATGCACTTGGTACTAATTCTTCCACATGTATCTTCTTCATGTGTGACATTACAAGTTAA	1120	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.943	7.258	0.905	0.789	0.921	0.826
Raw	59.856	92.308	9.264	12.282	3.308	3.929

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45366.1	492	2e-24	12 - 71	100	60 / 60	plus	None
JLOC1	JLOC1_29450.1	713	8e-25	232 - 291	100	60 / 60	plus
Harvest35	U35_4754	1221	3e-25	1121 - 1180	100	60 / 60	plus

Contig Sequence (1221 bp)

>U35_4754 1221 Hv_44K_v2
ACCCTCAGAGCGCGCGCAGAAGAAAAACCTCAGCCATCGGCCGGAGATCACGCGAGAAAT
CAGTCCGTCCGACATGGCGGCCGGAGGAGGGAGTGACGACGAGCTCAAGCTGCTGGGGTT
CTGGGCGAGCCCGTTCGTGCACCGGGCGCGGGTCGCGCTGCACCTCAAGGGGATCACCGG
CTACGAGTACGCCGAGGAGGACCTCACCAGCAAGAGCGACCTCCTCCTCGCCTCCAACCC
CGTGCACGCCAAGGTCCCCGTGCTCCTCCACGGCGGCAAGCCCGTCTGCGAGTCCATGCT
CATCGTGCAGTACCTCGACGAGGCCTTCCCCGGCTCCGGCTCCGGCCCCGCCCTCCTCCC
CGCCGACCCCCACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGCCGACGACCACTT
CTTTGCCTCGTGGATCAAGGCGTTCGCGGGGACGACGGACGAGGAGAGGGCGGCGGCGAC
GGAAGCCGCGGCGGCGGCGCTGCAGAAGATGGAGGGCGCGTTCGGCGAGTGCTCCAAGGG
CAAGGCCTTCTTCGGCGGCGACGCCCCGGGGTACGTGGACATCGCGCTGGGTGGGTACGT
CGCGTGGATGCGCGCGTTCCACGCGGTGGCCGGCGTGGACCTCCTGGACGCCGCCCGGAC
CCCGTTGCTGGCGGCCTGGGCTGAGCGCTTTGCCGCGCTCGACGCCGCCAAGGAGGTCAT
CCCGGACGTCGACCGCATCGCCGAGTTCGCCAAGCGCGATTTGCTGCCGCTGCTCCAGAA
ACTGCATACAAAAACAGAGCAGTGATCGAGCCAACCATTTACTGCTAGCGCTAGCAGTAG
GCCTCGAATTGGTGGCGGTGCTGCTGCTTGAAATAAGGATGCACAGTACTCCCTCCGTTC
CTAAATATAATAAGACTTTTTAGAGATTGCACTATAAACTACATACGGATATATATAGAC
ATATTTTAGAGTGTACATTCACTCATTTTGTTCCGTATGTAGTCGCCTAGTGAAATCTCT
AAAATGTCTTATATTTTGAAACGGAGGGAGTACAAGTTAATATGGGGTATCATTCTTCGG
CATGTATCTTCTTCATCTGCTGATCGTGGGTTGTTATACACATGCACTTGGTACTAATTC
TTCCACATGTATCTTCTTCATGTGTGACATTACAAGTTAATAAAAATGCCCTTTTTCTTT
TTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4754 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g38340.1	240	8e-88	protein\|glutathione S-transferase GSTU6, putative, expressed
Brachypodium v1_2	Bradi2g40790.1	241	1e-119
Arabidopsis v10	AT1G10360.1	227	4e-65	\| Symbols: ATGSTU18, GST29, GSTU18 \| glutathione S-transferase TAU 18 \| chr1:3395738-3396806 REVERSE LENGTH=227