- Probe CUST_1595_PI390587928
- Source Contig U35_30204
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_1595_PI390587928 | Hv_44K_v2 | GCAAAGGAATTGTTCTTTCGTGGTAGCGGTATTGGTATAGGAGGAGTTGTGATGAAAAAA | 239 | GeneList: thistle2 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.634 | 1.289 | 2.416 | 2.111 | 0.765 | 0.825 |
Raw | 170.951 | 562.026 | 915.429 | 1240.403 | 159.686 | 188.545 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK375674 | 3398 | 3e-21 | 3345 - 3398 | 100 | 54 / 54 | plus | ABC29995 |
JLOC1 | JLOC1_51578.1 | 2915 | 6e-21 | 2705 - 2760 | 98 | 55 / 56 | plus | |
Harvest21 | ABC29995 | 310 | 3e-25 | 240 - 299 | 100 | 60 / 60 | plus | ABC29995 |
Harvest35 | U35_30204 | 310 | 3e-25 | 240 - 299 | 100 | 60 / 60 | plus |
Contig Sequence (310 bp)
>U35_30204 310 Hv_44K_v2 GCAATCCGCACAGAGCAGCGGCTGTCCGCGGAGGTATGGAGGGAGGCGGCCAGGCGCGGC ACCATGGCCGGGCAGGCCCTGGACGACCTTGCCGCCGGCGACGTGGAGCGCGCGGTGGCG GCCGGCGTGGCGCGCGAGGCGTTCCGGATCGGCGCGCTGATCGAGCGGGACCTGGTGCAG GAGCTGGTGCACGAGGTCGGGCAAGACATGCTCAGAGCAGCTGCCGTAAACTTGTAACAG CAAAGGAATTGTTCTTTCGTGGTAGCGGTATTGGTATAGGAGGAGTTGTGATGAAAAAAA AAAAAAAAAA
Homology of Contig U35_30204 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |