barSeed - Barley Seed Development Database

Probe CUST_15959_PI390587928

Source Contig U35_4756

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15959_PI390587928	Hv_44K_v2	AATCGTTCCATGTGTCATCTATAGCTGGCTAATGCATCATGTCACATTTTGGCTAAAAAA	1310	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.371	2.226	2.151	1.147	0.361	0.316
Raw	46.918	127.772	102.519	88.990	9.443	9.080

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14877.1	2758	7e-23	1230 - 1290	98	60 / 61	minus	ABC15023
JLOC1	JLOC1_10164.1	2691	4e-23	1524 - 1584	98	60 / 61	plus
Harvest21	ABC51146	303	6e-22	250 - 303	100	54 / 54	plus
Harvest35	U35_4756	1421	3e-25	1311 - 1370	100	60 / 60	plus

Contig Sequence (1421 bp)

>U35_4756 1421 Hv_44K_v2
CTGGGCTTTCACGCTCTGACCGGCACGCCGGCGGTGGTGCCGCCGCCGCGGCTGCCGCGC
CACGGTCGGCGGACAGCGACCAGAAGGCGCTACTCGAGACCGTCATTGTCAACCTCCCGG
AGGAGACCATCAAGAGCAGTGCCCACACCGGCACGGCAGTGGGCGCCACCACCGCGCGCG
TCCTGTTCGGCCTGCTGCGCACGGCAAACATTCTGCAGGCATCAGAGGCTTCCCGTGACA
TGCTGGAGCGGCGCGTGGCCTCCAGGCTGCCCGACGCGGCCGTCGACGACCTGCTCATCC
CGAGCTACTCGTACCTCGTGGAGACGCTCTACGACGTGGACTGTGTGGAGCGCATCGTGC
GGCACTTCCTCGAGGGCCGAGGCGGCGGTGTCGAGGAGGTCGACGAGGAGTGCAGCGAGG
CGGAGACGCCGGGCAGAGAGGCTAGCAGACGAGCCATGCTGGCCGTGGGCAGGCTGATGG
ACGCCTACCTTGGGGAGATCGCCACGGACGCCAACCTGAAGACAGACAAGTTCTGCGACC
TCGCATGGGCATTGCCGGACGGCGCCCGCGTCTACGACGACGGCCTTTACCGTGCCGTCG
ACATCTACATCAAGGCACATCCAGCGCTGAGGGAAGAGGAGAAGGAGAAGGTGAGCGGCG
TGGTGGACGGGCGCAAGCTGACGCTGGAGGCGTGCACGCATGCCGCGCAGAACGAGCGTC
TGCCGCTGCGGACGGTGGTGCAGGTGCTCTTCTTCGAGCAGCTCCAGCTGCGCCGGGCCA
TCGCCCGGACGATGGTGGCGAATGAAGGCGGTGCAGCAGTCCAAGGAGAGGAAGAAGGCG
ACAGCGATGGTGGTCGGACATGGCGGGTGGCGACCAGGGGAAACCAAATGCTCAGGCTGG
ACATGGACAGCATGCGGAACCGGGTGCAGGAGCTAGAGCGGGAGTGCACCACCATGAGGA
AAGCCATTCAGAAGATAGACCGCCGAGGCGGCGCCCCTGGGGATAGGGGAGCGGCACCGG
CTGCGGAGGGCAGGTGGGGTTCAATGGTGACCAAGAGGTTCGGATGCAAGTTCCCGGCGC
AGGTCTGCCAGTCACAGCCGCGGTCGGTGGTGGCGCGGCCTCGCCGGGCACGGATTGAGC
AGAGCCCCTGATACCTCCTCCTTCCCCACTGCACATGATAGCTTTCCTCAGCTTCCCTGT
TTTGTTCTCTTGATTCTTTGCTTCGATTTGTGAAAATACGAGGGGTTTTCCTAGGAGGAA
TTGTGAGCTTCATCATGTTTGATCGATCAAATTTCGTTGTAGCAGTGCACAATCGTTCCA
TGTGTCATCTATAGCTGGCTAATGCATCATGTCACATTTTGGCTAAAAAAATTGCCTCAT
TGTTCTCACCACTTATCCGAGTCTAACAAAAAAAAAAAAAA

Homology of Contig U35_4756 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55830.1	684	2e-166	protein\|BTBN10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
Brachypodium v1_2	Bradi1g07457.1	682	8e-178
Arabidopsis v10	AT5G66560.1	668	2e-91	Phototropic-responsive NPH3 family protein \| chr5:26564368-26566662 FORWARD LENGTH=668