barSeed - Barley Seed Development Database

Probe CUST_15958_PI390587928

Source Contig U35_4757

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15958_PI390587928	Hv_44K_v2	GTCTGTACAAAAACTTGTTTTGGGGGTATTTTTCTGCCTTTTAATCGAAAACATTGTTCC	1202	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375083	2708	2e-24	2642 - 2701	100	60 / 60	plus	ABC15974 ABC19459
MLOC	MLOC_20204.1	1979	2e-24	1142 - 1201	100	60 / 60	plus	ABC15974 ABC19459
MLOC	MLOC_20204.2	1656	2e-24	1029 - 1088	100	60 / 60	plus	ABC15974 ABC19459
JLOC1	JLOC1_14012.1	1034	8e-25	839 - 898	100	60 / 60	plus
Harvest35	U35_4757	1283	3e-25	1203 - 1262	100	60 / 60	plus

Contig Sequence (1283 bp)

>U35_4757 1283 Hv_44K_v2
AAATCACGCCCTGTCCACCAGACTAAACGAGGGATGGAGCCAGAGTTTGTTCTGCCTTTG
GTACCCGATTTTGATAGGTATAACGATCCATTTGTTATGGTGAATTTTGATGGAGATCCT
ACAGCTGATTCAGAGCAGTATACCAAGCTAGAGAGATCTGTACGTGATGAATGCGAATCC
CAGGCTCTGATGAAAAGTTTTCAAGTCAGTGGTTCAGACCCTGCAAAACAAGAGAGATTT
TTGGCATACATGGCTCCAGCACCCCATGAGCTTGTCAAGGACTTTGATGATGAAAACGAA
GACTTCCAGTACTCCTGGATTCGGGAATATCACTGGGAAGTAAGGGGGGATGACAAGCAA
GATCCAACAACATACCTTGTCTCATTTGATGACGATGATGCAAAATATTTGCCTCTTCCT
ACCAAGCTAGTATTGCAGAAGAAGAAAGCTAAAGAGGGGAGAACTGGGGATGAAATCGAG
CATTTCCCAGTGCCTTCTAGGATTAATGTGAGCAGGACAGCACATGGTGATGAGATGGAG
CATGGAGAATCATCCAGCATGCATGGGAATTTGAAGCGACAAAGATCTTCTGTTGATGAT
GATCTTGATGAGCATCCGAGGCATTCTCGTGTAGAAGATATGGACCAGTATAGTGAAGAA
TATTCTGAATGATCAATAGATATGGAAGGATCATCATTTTCTTGCACCGTCGGATTCATC
AGCACATATGAATCTCTGAAGATCTCATATGCATTTGCTCTGATGCCTCCATAACTAGTA
ATAGGGTGTAGGGTTGATGAAAGAACATGCTTGAGTGCATTCGGGCAATAGCAGATTTTG
AAGTGCAGAGTGGGCAAAGCAAGGCAGAGTGCAACTGGACCTAAGACTGGTCTCAGAGCT
GAGGGTAGAAGGTCTCATCATGATTGTAAAAAAAAGAAGGCTCTGTAGTATGCTGTTTTG
ATGATATATGCAACTGTTTTTACCATTTGATTTGTGTAAGTAGAACAATTTATTTTGTCA
GGATTCTAGACAGTTGCGCAATCGCAGTTTTATTTTCTGGTGGAAATTATGATCGACATA
TCGAAGGTCGTGTATTTGTGCTACCAGGAATGTTAAGGCGCGCTTACTGACGATCAAGAG
CAGCATTGCAAGAAGAGTAAACTGTGTTTTCAGTTTTTTTTTTTGCATGTTGTAACTGTA
GTGTCTGTACAAAAACTTGTTTTGGGGGTATTTTTCTGCCTTTTAATCGAAAACATTGTT
CCTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4757 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06070.1	452	1e-134	protein\|ELF7, putative, expressed
Brachypodium v1_2	Bradi3g16550.1	451	7e-143
Arabidopsis v10	AT1G79730.1	589	1e-65	\| Symbols: ELF7 \| hydroxyproline-rich glycoprotein family protein \| chr1:30000743-30003969 REVERSE LENGTH=589